diff 1.0.0/workflows/conf/bettercallsal_db.config @ 0:0a8dda29956e draft default tip

planemo upload
author galaxytrakr
date Thu, 28 May 2026 20:41:10 +0000
parents
children
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/1.0.0/workflows/conf/bettercallsal_db.config	Thu May 28 20:41:10 2026 +0000
@@ -0,0 +1,43 @@
+params {
+    workflow_conceived_by = 'Kranti Konganti'
+    workflow_built_by = 'Kranti Konganti'
+    workflow_version = '1.0.0'
+    pdg_release = 'PDG000000002.3082'
+    ncbi_asm_suffix = '_genomic.fna.gz'
+    wcomp_serocol = false
+    wcomp_seronamecol = false
+    wcomp_acc_col = false
+    wcomp_target_acc_col = false
+    wcomp_complete_sero = false
+    wcomp_not_null_serovar = false
+    wcomp_num = false
+    wcomp_min_contig_size = false
+    wcomp_i = false 
+    wsnp_serocol = false
+    wsnp_seronamecol = false
+    wsnp_acc_col = false
+    wsnp_target_acc_col = false
+    wsnp_complete_sero = true
+    wsnp_not_null_serovar = false
+    wsnp_num = false
+    wsnp_i = "'I 4,[5],12:i:-'" 
+    genomes_chunk = 100
+    mashsketch_run = true
+    mashsketch_l = true
+    mashsketch_I = false
+    mashsketch_C = false
+    mashsketch_k = 21
+    mashsketch_s = 1000
+    mashsketch_i = false
+    mashsketch_S = false
+    mashsketch_w = false
+    mashsketch_r = false
+    mashsketch_b = false
+    mashsketch_m = false
+    mashsketch_c = false
+    mashsketch_g = false
+    mashsketch_n = false
+    mashsketch_a = false
+    mashsketch_z = false
+    mashsketch_Z = false
+}