--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/1.0.0/modules/nanoplot/main.nf	Thu May 28 20:41:10 2026 +0000
@@ -0,0 +1,39 @@
+process NANOPLOT {
+    tag "$meta.id"
+    label 'process_micro'
+
+    module (params.enable_module ? "${params.swmodulepath}${params.fs}NanoPlot${params.fs}1.43.0" : null)
+    conda (params.enable_conda ? "conda-forge::plotly bioconda::nanoplot=1.43.0" : null)
+    container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
+        'https://depot.galaxyproject.org/singularity/nanoplot:1.42.0--pyhdfd78af_0' :
+        'quay.io/biocontainers/nanoplot:1.42.0--pyhdfd78af_0' }"
+
+    input:
+        tuple val(meta), path(ontfile)
+
+    output:
+        tuple val(meta), path("*.html"), emit: html
+        tuple val(meta), path("*.png") , emit: png, optional: true
+        tuple val(meta), path("*.txt") , emit: txt
+        tuple val(meta), path("*.log") , emit: log
+        path  "versions.yml"           , emit: versions
+
+    when:
+        task.ext.when == null || task.ext.when
+
+    script:
+        def args = task.ext.args ?: ''
+        def input_file = ("$ontfile".endsWith(".fastq.gz") || "$ontfile".endsWith(".fq.gz")) ? "--fastq ${ontfile}" :
+            ("$ontfile".endsWith(".txt")) ? "--summary ${ontfile}" : ''
+        """
+        NanoPlot \\
+            $args \\
+            -t $task.cpus \\
+            $input_file
+
+        cat <<-END_VERSIONS > versions.yml
+        "${task.process}":
+            nanoplot: \$(echo \$(NanoPlot --version 2>&1) | sed 's/^.*NanoPlot //; s/ .*\$//')
+        END_VERSIONS
+        """
+}
\ No newline at end of file