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1 params {
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2 fs = File.separator
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3 cfsanpipename = 'CPIPES'
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4 center = 'CFSAN, FDA.'
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5 libs = "${projectDir}${params.fs}lib"
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6 modules = "${projectDir}${params.fs}modules"
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7 projectconf = "${projectDir}${params.fs}conf"
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8 assetsdir = "${projectDir}${params.fs}assets"
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9 subworkflows = "${projectDir}${params.fs}subworkflows"
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10 workflows = "${projectDir}${params.fs}workflows"
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11 workflowsconf = "${workflows}${params.fs}conf"
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12 routines = "${libs}${params.fs}routines"
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13 toolshelp = "${libs}${params.fs}help"
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14 swmodulepath = "${params.fs}nfs${params.fs}software${params.fs}modules"
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15 tracereportsdir = "${launchDir}${params.fs}${cfsanpipename}-${params.pipeline}${params.fs}nextflow-reports"
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16 dummyfile = "${projectDir}${params.fs}assets${params.fs}dummy_file.txt"
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17 dummyfile2 = "${projectDir}${params.fs}assets${params.fs}dummy_file2.txt"
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18 linewidth = 80
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19 pad = 32
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20 pipeline = null
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21 help = null
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22 input = null
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23 output = null
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24 metadata = null
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25 publish_dir_mode = "copy"
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26 publish_dir_overwrite = true
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27 user_email = null
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28 }
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29
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30 dag {
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31 enabled = true
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32 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_dag.html"
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33 overwrite = true
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34 }
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35
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36 report {
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37 enabled = true
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38 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_report.html"
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39 overwrite = true
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40 }
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41
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42 trace {
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43 enabled = true
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44 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_trace.txt"
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45 overwrite = true
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46 }
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47
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48 timeline {
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49 enabled = true
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50 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_timeline.html"
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51 overwrite = true
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52 }
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