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0
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1 plugins {
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2 id 'nf-amazon'
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3 }
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4
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5 params {
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6 fs = File.separator
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7 cfsanpipename = 'CPIPES'
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8 center = 'CFSAN, FDA.'
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9 libs = "${projectDir}${params.fs}lib"
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10 modules = "${projectDir}${params.fs}modules"
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11 projectconf = "${projectDir}${params.fs}conf"
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12 assetsdir = "${projectDir}${params.fs}assets"
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13 subworkflows = "${projectDir}${params.fs}subworkflows"
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14 workflows = "${projectDir}${params.fs}workflows"
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15 workflowsconf = "${workflows}${params.fs}conf"
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16 routines = "${libs}${params.fs}routines"
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17 toolshelp = "${libs}${params.fs}help"
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18 swmodulepath = "${params.fs}nfs${params.fs}software${params.fs}modules"
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19 tracereportsdir = "${launchDir}${params.fs}${cfsanpipename}-${params.pipeline}${params.fs}nextflow-reports"
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20 dummyfile = "${projectDir}${params.fs}assets${params.fs}dummy_file.txt"
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21 dummyfile2 = "${projectDir}${params.fs}assets${params.fs}dummy_file2.txt"
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22 max_cpus = 10
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23 linewidth = 80
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24 pad = 32
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25 pipeline = null
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26 help = null
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27 input = null
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28 output = null
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29 metadata = null
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30 publish_dir_mode = "copy"
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31 publish_dir_overwrite = true
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32 user_email = null
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33 }
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34
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35 dag {
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36 enabled = true
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37 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_dag.html"
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38 overwrite = true
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39 }
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40
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41 report {
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42 enabled = true
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43 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_report.html"
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44 overwrite = true
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45 }
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46
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47 trace {
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48 enabled = true
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49 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_trace.txt"
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50 overwrite = true
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51 }
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52
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53 timeline {
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54 enabled = true
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55 file = "${params.tracereportsdir}${params.fs}${params.pipeline}_exec_timeline.html"
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56 overwrite = true
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57 }
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58
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