Mercurial > repos > galaxytrakr > mitokmer
changeset 7:56b71adcaba7 draft
planemo upload commit acd0f9df0a6b4aacd9c53c73e3b8e94dd36ee3dc
| author | galaxytrakr |
|---|---|
| date | Tue, 15 Sep 2026 22:25:19 +0000 |
| parents | e4d4fc748584 |
| children | 2b1f3db24c25 |
| files | mitokmer.xml |
| diffstat | 1 files changed, 3 insertions(+), 3 deletions(-) [+] |
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--- a/mitokmer.xml Tue Sep 15 18:39:31 2026 +0000 +++ b/mitokmer.xml Tue Sep 15 22:25:19 2026 +0000 @@ -1,4 +1,4 @@ -<tool id="mitokmer" name="mitoKmer" version="2.0+galaxy0.22" profile="21.05"> +<tool id="mitokmer" name="mitoKmer" version="2.0+galaxy0.23" profile="21.05"> <description>Identify metagenomic mitochondrial reads by k-mer database matching</description> <requirements> <container type="docker">quay.io/galaxytrakr/mitokmer:e57a559</container> @@ -23,7 +23,7 @@ ## ── Stage input reads and build jobs file ──────────────────────────── #if $reads.reads_type == "single" mkdir -p ./reads && - #set sample_name = $reads.input.name.replace(' ', '_') + #set sample_name = re.sub('[^\w\-_.]', '_', $reads.input.name) #set read_count = 0 #for $read in $reads.input #set ext = $fix_ext($read.ext) @@ -40,7 +40,7 @@ #else ## paired collection: forward + reverse mkdir -p ./reads && - #set sample_name = $reads.input.name.replace(' ', '_') + #set sample_name = re.sub('[^\w\-_.]', '_', $reads.input.name) #set fwd_ext = $fix_ext($reads.input.forward.ext) #set rev_ext = $fix_ext($reads.input.reverse.ext) #set base = re.sub('[^\w\-_.]', '_', $reads.input.element_identifier)