Mercurial > repos > galaxytrakr > plasmidtrakr

comparison plasmidtrakr.xml @ 8:17b409c9320d draft

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planemo upload commit 8fe81cc450c2773ca4183b693341de07ff0337e9
author galaxytrakr
date Wed, 29 Apr 2026 20:37:38 +0000
parents cc937b6c75b5
children c78b7a3494f9
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7:cc937b6c75b5 8:17b409c9320d
1 <tool id="plasmidtrakr" name="Predict Isolate Source" version="0.1.5"> 1 <tool id="plasmidtrakr" name="Predict Isolate Source" version="0.1.6">
2 <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description> 2 <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.5.3">pandas</requirement> 5 <requirement type="package" version="1.5.3">pandas</requirement>
6 <requirement type="package" version="1.2.2">scikit-learn</requirement> 6 <requirement type="package" version="1.2.2">scikit-learn</requirement>
25 25
26 <param name="threshold" type="float" value="0.95" label="Mash Identity Threshold" help="Filter plasmid hits below this identity. Must match the threshold used for model training."/> 26 <param name="threshold" type="float" value="0.95" label="Mash Identity Threshold" help="Filter plasmid hits below this identity. Must match the threshold used for model training."/>
27 </inputs> 27 </inputs>
28 28
29 <outputs> 29 <outputs>
30 <data name="prediction_output" format="tabular" label="Prediction for ${on_string} using ${model_selection.name}" /> 30 <data name="prediction_output" format="tabular" label="Prediction for ${on_string}" />
31 </outputs> 31 </outputs>
32 32
33 <!-- FIXED: Cleaned up Markdown formatting in the help block (removed backslashes) --> 33 <!-- FIXED: Cleaned up Markdown formatting in the help block (removed backslashes) -->
34 <help><![CDATA[ 34 <help><![CDATA[
35 **What it does** 35 **What it does**