Mercurial > repos > galaxytrakr > plasmidtrakr

comparison plasmidtrakr.xml @ 9:c78b7a3494f9 draft

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planemo upload commit 117de6ae3eb1896dcb0044059b268136fc1b97ab
author galaxytrakr
date Wed, 29 Apr 2026 23:21:59 +0000
parents 17b409c9320d
children cbc924a737db
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8:17b409c9320d 9:c78b7a3494f9
1 <tool id="plasmidtrakr" name="Predict Isolate Source" version="0.1.6"> 1 <tool id="plasmidtrakr" name="PlasmidTrakr" version="0.1.8">
2 <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description> 2 <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.5.3">pandas</requirement> 5 <requirement type="package" version="1.5.3">pandas</requirement>
6 <requirement type="package" version="1.2.2">scikit-learn</requirement> 6 <requirement type="package" version="1.2.2">scikit-learn</requirement>
7 </requirements> 7 </requirements>
8 8
9 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
10 python ${__tool_directory__}/predict_source.py 10 python $__tool_directory__/predict_source.py
11 -i '$mash_input' 11 -i '$mash_input'
12 -b '$model_selection.path' 12 -b '$model_selection.path'
13 -t '$threshold' 13 -t '$threshold'
14 -o '$prediction_output' 14 -o '$prediction_output'
15 ]]></command> 15 ]]></command>