Mercurial > repos > galaxytrakr > plasmidtrakr

comparison plasmidtrakr.xml @ 7:cc937b6c75b5 draft

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planemo upload commit 021b26b29595f4052f55b7a51bb84e8bcb0898ad
author galaxytrakr
date Wed, 29 Apr 2026 20:25:19 +0000
parents b226c7a8580d
children 17b409c9320d
comparison
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6:b226c7a8580d 7:cc937b6c75b5
1 <tool id="plasmidtrakr" name="Predict Isolate Source" version="0.1.4"> 1 <tool id="plasmidtrakr" name="Predict Isolate Source" version="0.1.5">
2 <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description> 2 <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description>
3 3
4 <requirements> 4 <requirements>
5 <requirement type="package" version="1.5.3">pandas</requirement> 5 <requirement type="package" version="1.5.3">pandas</requirement>
6 <requirement type="package" version="1.2.2">scikit-learn</requirement> 6 <requirement type="package" version="1.2.2">scikit-learn</requirement>
7 </requirements> 7 </requirements>
8 8
9 <!-- FIXED: Added $ before __tool_directory__ -->
10 <version_command>
11 python '$__tool_directory__/predict_source.py' --version
12 </version_command>
13
14 <!-- FIXED: Added $ before __tool_directory__ -->
15 <command detect_errors="exit_code"><![CDATA[ 9 <command detect_errors="exit_code"><![CDATA[
16 python '$__tool_directory__/predict_source.py' 10 python ${__tool_directory__}/predict_source.py
17 -i '$mash_input' 11 -i '$mash_input'
18 -b '$model_selection.path' 12 -b '$model_selection.path'
19 -t '$threshold' 13 -t '$threshold'
20 -o '$prediction_output' 14 -o '$prediction_output'
21 ]]></command> 15 ]]></command>