Mercurial > repos > galaxytrakr > plasmidtrakr

changeset 12:c76b0b6f26cc draft

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planemo upload commit 87d0ed33e6ad95db36317819331bc84e6d441d50
author galaxytrakr
date Thu, 30 Apr 2026 02:03:38 +0000
parents 6749dde97f01
children 6eaad34862cb
files plasmidtrakr.xml
diffstat 1 files changed, 2 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/plasmidtrakr.xml	Thu Apr 30 01:43:07 2026 +0000
+++ b/plasmidtrakr.xml	Thu Apr 30 02:03:38 2026 +0000
@@ -1,4 +1,4 @@
-<tool id="plasmidtrakr" name="PlasmidTrakr" version="0.1.10">
+<tool id="plasmidtrakr" name="PlasmidTrakr" version="0.1.11">
     <description>Predicts isolate source from plasmid profiles using a trained machine learning model</description>
 
     <requirements>
@@ -9,7 +9,7 @@
     <command detect_errors="exit_code"><![CDATA[
         python $__tool_directory__/predict_source.py
             -i $mash_input
-            -b $model_selection
+            -b $model_selection.fields.path
             -t $threshold
             -o $prediction_output
     ]]></command>
@@ -19,8 +19,6 @@
 
         <param name="model_selection" type="select" label="Select Prediction Model" help="Choose which trained model to use for prediction.">
             <options from_data_table="plasmidtrakr_models">
-                <column name="value" index="0"/>
-                <column name="name" index="1"/>
                 <validator type="no_options" message="No prediction models are configured. Please contact your Galaxy administrator." />
             </options>
         </param>