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comparison snrqk2.xml @ 0:2547394443a0

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"planemo upload commit 8b4c59e523d28c30368aebfa0416d9ff8e27d257"
author jasmine_amir
date Thu, 09 Jun 2022 19:29:02 -0400
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1 <tool id="snrqk2" name="SNRQK2" version="2">
2 <description>Compute SSQuAWK QC metrics within SSQuAWK version 4+ workflow</description>
3 <requirements>
4 <requirement type="package" version="3.7.12">python</requirement>
5 <requirement type="package" version="1.1.5">pandas</requirement>
6 </requirements>
7 <command detect_errors="exit_code"><![CDATA[
8 bash '$__tool_directory__/snrqk2.sh' $input
9 ]]>
10 </command>
11 <inputs>
12 <param name="input" type="data" format="tabular" label="Source file"/>
13 </inputs>
14 <outputs>
15 <data format="tabular" label="snrqk_result" name = "results" from_work_dir="snrqk_result.tsv" />
16 </outputs>
17 <tests>
18 <test>
19 <param name="input" value = "joinSamBow_nc.txt" ftype = "tabular"/>
20 <output name="results" file="snrqk_result.tsv" />
21 </test>
22 </tests>
23 <help> "This tool computes QC metrics within the SSQuAWK version 4+ workflow."
24 </help>
25 <citations>
26 <citation type="bibtex">
27 @misc{SSQuAWK,
28 title={SSQuAWK}, url={https://www.protocols.io/view/wastewater-qc-workflow-in-galaxytrakr-ssquawk3-kxygxzk5dv8j/v5}},
29 </citation>
30 </citations>
31 </tool>