jasmine_amir@2: <tool id="snrqk2" name="SNRQK2" version="3">
jasmine_amir@1:   <description>Compute SSQuAWK QC metrics within SSQuAWK version 4+ workflow, v2</description>
jasmine_amir@0:     <requirements>
jasmine_amir@5:       <requirement type="package" version="3.7.12">python</requirement>
jasmine_amir@5:       <requirement type="package" version="1.1.5">pandas</requirement>		  
jasmine_amir@0:     </requirements>
jasmine_amir@0:     <command detect_errors="exit_code"><![CDATA[
jasmine_amir@0: 	   bash '$__tool_directory__/snrqk2.sh' $input
jasmine_amir@0: ]]>
jasmine_amir@0:   </command>
jasmine_amir@0:   <inputs>
jasmine_amir@0:     <param name="input" type="data" format="tabular" label="Source file"/>
jasmine_amir@0:   </inputs>
jasmine_amir@0:   <outputs>
jasmine_amir@0:     <data format="tabular" label="snrqk_result" name = "results" from_work_dir="snrqk_result.tsv" />
jasmine_amir@0:   </outputs>
jasmine_amir@0:       <tests>
jasmine_amir@0:         <test>
jasmine_amir@0:                 <param name="input" value = "joinSamBow_nc.txt" ftype = "tabular"/>
jasmine_amir@0:                 <output name="results" file="snrqk_result.tsv" />
jasmine_amir@0:        </test>
jasmine_amir@0:     </tests>
jasmine_amir@0:   <help> "This tool computes QC metrics within the SSQuAWK version 4+ workflow."
jasmine_amir@0:   </help>
jasmine_amir@0:     <citations>
jasmine_amir@0:        <citation type="bibtex">
jasmine_amir@0:         @misc{SSQuAWK,
jasmine_amir@0:         title={SSQuAWK}, url={https://www.protocols.io/view/wastewater-qc-workflow-in-galaxytrakr-ssquawk3-kxygxzk5dv8j/v5}},
jasmine_amir@0:        </citation>
jasmine_amir@0:     </citations>
jasmine_amir@0: </tool>