# HG changeset patch # User jasmine_amir # Date 1654821684 14400 # Node ID 3ea772b97dd52ccb260f788f45e320cbf0d6a6f7 # Parent 2547394443a0d83a88b749e8496aca0028b638d2 "planemo upload commit 7a9829fbbe81758ebaefb654e829ec67a102949e" diff -r 2547394443a0 -r 3ea772b97dd5 snrqk2.sh --- a/snrqk2.sh Thu Jun 09 19:29:02 2022 -0400 +++ b/snrqk2.sh Thu Jun 09 20:41:24 2022 -0400 @@ -1,4 +1,4 @@ #!/usr/bin/env bash -echo "The script you are running has basename $( basename -- "$0"; ), dirname $( dirname -- "$0"; )"; -echo "The present working directory is $( pwd; )"; +#echo "The script you are running has basename $( basename -- "$0"; ), dirname $( dirname -- "$0"; )"; +#echo "The present working directory is $( pwd; )"; python3 $( dirname -- "$0"; )/SNRQK2.py $1 diff -r 2547394443a0 -r 3ea772b97dd5 snrqk2.xml --- a/snrqk2.xml Thu Jun 09 19:29:02 2022 -0400 +++ b/snrqk2.xml Thu Jun 09 20:41:24 2022 -0400 @@ -1,5 +1,5 @@ - - Compute SSQuAWK QC metrics within SSQuAWK version 4+ workflow + + Compute SSQuAWK QC metrics within SSQuAWK version 4+ workflow, v2 python pandas