Mercurial > repos > jpayne > bam_dealer

diff paired_bam_dealer.xml @ 3:b7bbe08d50df

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planemo upload commit b'f16e028df365af5bc6b4b441152d278a55e40ffe\n'-dirty
author jpayne
date Wed, 06 Dec 2017 14:45:13 -0500
parents 628a56494663
children 881a24a35480
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--- a/paired_bam_dealer.xml	Wed Dec 06 13:55:05 2017 -0500
+++ b/paired_bam_dealer.xml	Wed Dec 06 14:45:13 2017 -0500
@@ -1,8 +1,8 @@
 <tool id="paired_bam_dealer" name="Deal out" version="0.1.0">
 	<description>paired-end reads by alignment or non-alignment to a reference</description>
     <requirements>
-    	<requirement type="binary" version="1.5">samtools</requirement>
-    	<requirement type="binary" version="2.26">bedtools</requirement>
+    	<requirement type="Tool_Shed_Package" version="1.5">samtools</requirement>
+    	<requirement type="Tool_Shed_Package" version="2.26">bedtools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
         bamToFastq -i <(samtools sort -n <(samtools view -u -f 1 -F 12 $input_bam  ))