Mercurial > repos > jpayne > bioproject2srr

annotate test-data/metadata.tsv @ 0:79fa4330f2c9 draft default tip

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planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
author jpayne
date Mon, 08 Dec 2025 20:18:03 +0000
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79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
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1 bioproject biosample_accession organism taxid package Genus ProjectAccession PublicAccession Species attribute_package collected_by collection_date geo_loc_name isolate isolate_name_alias isolation_source lat_lon project_name sequenced_by sra_run_accession strain total_bases total_spots
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
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2 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160357 ECP19-2498 312756765 660858
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
parents:
diff changeset
3 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160358 ECP19-2498 327001270 704624
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
parents:
diff changeset
4 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160360 ECP19-598 316865532 683880
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
parents:
diff changeset
5 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160359 ECP19-798 473318585 1007158
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
parents:
diff changeset
6 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13167188 ECP19-198 385043067 827691
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
parents:
diff changeset
7 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition CJP19-D445
79fa4330f2c9 planemo upload commit 27af5cba48986d508a67a5024a3bd35dd47bee15-dirty
jpayne
parents:
diff changeset
8 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition CJP19-D996