Mercurial > repos > jpayne > bioproject_to_srr
annotate bio2srr.xml @ 0:bbf3b6e6a026 tip
planemo upload commit b'4aa8338dc8bcd7f6c0fb675044ea9d0c045ee7f3\n'
| author | jpayne |
|---|---|
| date | Tue, 05 Dec 2017 11:42:47 -0500 |
| parents | |
| children |
| rev | line source |
|---|---|
| jpayne@0 | 1 <tool id="bio2srr" name="Bioproject to SRR" version="0.1.0"> |
| jpayne@0 | 2 <description>Retrieve SRR accessions from BioProject or BioSample.</description> |
| jpayne@0 | 3 <requirements> |
| jpayne@0 | 4 <requirement type="package" version="2.18.4">requests</requirement> |
| jpayne@0 | 5 </requirements> |
| jpayne@0 | 6 <command detect_errors="exit_code"><![CDATA[ |
| jpayne@0 | 7 $__tool_directory__/bio2srr.py "$input1" > "$output" |
| jpayne@0 | 8 ]]></command> |
| jpayne@0 | 9 <inputs> |
| jpayne@0 | 10 <param type="text" name="input1" label="BioProject or BioSample" /> |
| jpayne@0 | 11 </inputs> |
| jpayne@0 | 12 <outputs> |
| jpayne@0 | 13 <data format="txt" name="output" /> |
| jpayne@0 | 14 </outputs> |
| jpayne@0 | 15 <tests> |
| jpayne@0 | 16 <test> |
| jpayne@0 | 17 <param name="input1" value="NOTHING" /> |
| jpayne@0 | 18 <output name="output" file="test.txt" /> |
| jpayne@0 | 19 </test> |
| jpayne@0 | 20 </tests> |
| jpayne@0 | 21 <help><![CDATA[ |
| jpayne@0 | 22 Retrieve SRR accessions by BioSample or BioProject. |
| jpayne@0 | 23 ]]></help> |
| jpayne@0 | 24 <citations> |
| jpayne@0 | 25 </citations> |
| jpayne@0 | 26 </tool> |