Mercurial > repos > jpayne > bioproject_to_srr

comparison bio2srr.xml @ 0:bbf3b6e6a026 tip

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planemo upload commit b'4aa8338dc8bcd7f6c0fb675044ea9d0c045ee7f3\n'
author jpayne
date Tue, 05 Dec 2017 11:42:47 -0500
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-1:000000000000 0:bbf3b6e6a026
1 <tool id="bio2srr" name="Bioproject to SRR" version="0.1.0">
2 <description>Retrieve SRR accessions from BioProject or BioSample.</description>
3 <requirements>
4 <requirement type="package" version="2.18.4">requests</requirement>
5 </requirements>
6 <command detect_errors="exit_code"><![CDATA[
7 $__tool_directory__/bio2srr.py "$input1" > "$output"
8 ]]></command>
9 <inputs>
10 <param type="text" name="input1" label="BioProject or BioSample" />
11 </inputs>
12 <outputs>
13 <data format="txt" name="output" />
14 </outputs>
15 <tests>
16 <test>
17 <param name="input1" value="NOTHING" />
18 <output name="output" file="test.txt" />
19 </test>
20 </tests>
21 <help><![CDATA[
22 Retrieve SRR accessions by BioSample or BioProject.
23 ]]></help>
24 <citations>
25 </citations>
26 </tool>