annotate bio2srr.xml @ 0:02ac32a00e25

planemo upload commit 4aa8338dc8bcd7f6c0fb675044ea9d0c045ee7f3
author jpayne
date Tue, 18 Dec 2018 15:17:42 -0500
parents
children b07378e15ad9
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jpayne@0 1 <tool id="bio2srr" name="Bioproject to SRR" version="0.1.0">
jpayne@0 2 <description>Retrieve SRR accessions from BioProject or BioSample.</description>
jpayne@0 3 <requirements>
jpayne@0 4 <requirement type="package" version="2.18.4">requests</requirement>
jpayne@0 5 </requirements>
jpayne@0 6 <command detect_errors="exit_code"><![CDATA[
jpayne@0 7 $__tool_directory__/bio2srr.py "$input1" > "$output"
jpayne@0 8 ]]></command>
jpayne@0 9 <inputs>
jpayne@0 10 <param type="text" name="input1" label="BioProject or BioSample" />
jpayne@0 11 </inputs>
jpayne@0 12 <outputs>
jpayne@0 13 <data format="txt" name="output" />
jpayne@0 14 </outputs>
jpayne@0 15 <tests>
jpayne@0 16 <test>
jpayne@0 17 <param name="input1" value="NOTHING" />
jpayne@0 18 <output name="output" file="test.txt" />
jpayne@0 19 </test>
jpayne@0 20 </tests>
jpayne@0 21 <help><![CDATA[
jpayne@0 22 Retrieve SRR accessions by BioSample or BioProject.
jpayne@0 23 ]]></help>
jpayne@0 24 <citations>
jpayne@0 25 </citations>
jpayne@0 26 </tool>