annotate test-data/metadata.tsv @ 15:0a3943480712
planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/556cac4fb538
| author |
jpayne |
| date |
Tue, 21 May 2024 01:05:30 -0400 |
| parents |
fc77995bc4da |
| children |
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| rev |
line source |
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jpayne@4
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1 bioproject biosample_accession organism taxid package Genus ProjectAccession PublicAccession Species attribute_package collected_by collection_date geo_loc_name isolate isolate_name_alias isolation_source lat_lon project_name sequenced_by sra_run_accession strain total_bases total_spots
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jpayne@12
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2 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160357 ECP19-2498 312756765 660858
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jpayne@12
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3 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160358 ECP19-2498 327001270 704624
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jpayne@12
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4 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160360 ECP19-598 316865532 683880
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jpayne@12
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5 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13160359 ECP19-798 473318585 1007158
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jpayne@12
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6 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR13167188 ECP19-198 385043067 827691
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jpayne@12
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7 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition CJP19-D445
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jpayne@12
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8 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition CJP19-D996
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