Mercurial > repos > jpayne > bioproject_to_srr_2

annotate test-data/metadata.tsv @ 2:556cac4fb538

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/b07378e15ad9"
author jpayne
date Mon, 03 Aug 2020 10:39:37 -0400
parents
children 2d4a2159c74b
rev   line source
jpayne@2 1 sample biosample_accession isolation_source collection_date geo_loc_name lat_lon rel_to_oxygen samp_collect_device samp_mat_process samp_size source_material_id BioSampleModel ENA-SPOT-COUNT ENA-BASE-COUNT ENA-FIRST-PUBLIC ENA-LAST-UPDATE
jpayne@2 2 SRR11671300 SAMN14820590 marine sediment Not applicable North Sea: German Bight (Helgoland Mud Area) 54.052300 N 7.580400 E obligate anaerobe anoxic sampling of sediment slurry incubations at defined time points Previously collected sediments from Helgoland mud area, stored at 4ºC (near in-situ temperature) until use as starting material for incubation experiments. For the incubation experiments, anaerobic slurries were prepared in ratio 1:4 and incubated at 30ºC. Sample name identifies the unique information of each sample including the target 16S rRNA gene, incubation timepoint and state of the enrichment. 1 ml slurry in triplicates, Pooled DNA from triplicates were sequenced as 1 sample. sediment incubation at 30ºC without any amendment sampled after 105 days sequenced with bacteria PCR primers Metagenome or environmental 41855 6160440 2020-05-04 2020-05-04
jpayne@2 3 SRR11671283 SAMN14820597 marine sediment Not applicable North Sea: German Bight (Helgoland Mud Area) 54.052300 N 7.580400 E obligate anaerobe anoxic sampling of sediment slurry incubations at defined time points Previously collected sediments from Helgoland mud area, stored at 4ºC (near in-situ temperature) until use as starting material for incubation experiments. For the incubation experiments, anaerobic slurries were prepared in ratio 1:4 and incubated at 30ºC. Sample name identifies the unique information of each sample including the target 16S rRNA gene, incubation timepoint and state of the enrichment. 1 ml slurry in triplicates, Pooled DNA from triplicates were sequenced as 1 sample. sediment incubation at 30ºC without any amendment sampled after 105 days sequenced with archaea PCR primers Metagenome or environmental 19833 2973256 2020-05-04 2020-05-04