Mercurial > repos > jpayne > bioproject_to_srr_2
annotate bio2srr.xml @ 1:b07378e15ad9
planemo upload commit bce663a3ac9d4b5f86a3becf93c7639221ee01ea
| author | jpayne |
|---|---|
| date | Thu, 20 Dec 2018 11:04:53 -0500 |
| parents | 02ac32a00e25 |
| children | 556cac4fb538 |
| rev | line source |
|---|---|
| jpayne@0 | 1 <tool id="bio2srr" name="Bioproject to SRR" version="0.1.0"> |
| jpayne@0 | 2 <description>Retrieve SRR accessions from BioProject or BioSample.</description> |
| jpayne@0 | 3 <requirements> |
| jpayne@1 | 4 <requirement type="package">package_python_3_4</requirement> |
| jpayne@0 | 5 <requirement type="package" version="2.18.4">requests</requirement> |
| jpayne@0 | 6 </requirements> |
| jpayne@0 | 7 <command detect_errors="exit_code"><![CDATA[ |
| jpayne@0 | 8 $__tool_directory__/bio2srr.py "$input1" > "$output" |
| jpayne@0 | 9 ]]></command> |
| jpayne@0 | 10 <inputs> |
| jpayne@0 | 11 <param type="text" name="input1" label="BioProject or BioSample" /> |
| jpayne@0 | 12 </inputs> |
| jpayne@0 | 13 <outputs> |
| jpayne@0 | 14 <data format="txt" name="output" /> |
| jpayne@0 | 15 </outputs> |
| jpayne@0 | 16 <tests> |
| jpayne@0 | 17 <test> |
| jpayne@0 | 18 <param name="input1" value="NOTHING" /> |
| jpayne@0 | 19 <output name="output" file="test.txt" /> |
| jpayne@0 | 20 </test> |
| jpayne@0 | 21 </tests> |
| jpayne@0 | 22 <help><![CDATA[ |
| jpayne@0 | 23 Retrieve SRR accessions by BioSample or BioProject. |
| jpayne@0 | 24 ]]></help> |
| jpayne@0 | 25 <citations> |
| jpayne@0 | 26 </citations> |
| jpayne@0 | 27 </tool> |