Mercurial > repos > jpayne > bioproject_to_srr_2

comparison test-data/metadata.tsv @ 4:2d4a2159c74b

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planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/556cac4fb538
author jpayne
date Fri, 03 May 2024 01:17:43 -0400
parents 556cac4fb538
children fc77995bc4da
comparison
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3:80f1001797c7 4:2d4a2159c74b
1 sample biosample_accession isolation_source collection_date geo_loc_name lat_lon rel_to_oxygen samp_collect_device samp_mat_process samp_size source_material_id BioSampleModel ENA-SPOT-COUNT ENA-BASE-COUNT ENA-FIRST-PUBLIC ENA-LAST-UPDATE 1 bioproject biosample_accession organism taxid package Genus ProjectAccession PublicAccession Species attribute_package collected_by collection_date geo_loc_name isolate isolate_name_alias isolation_source lat_lon project_name sequenced_by sra_run_accession strain total_bases total_spots
2 SRR11671300 SAMN14820590 marine sediment Not applicable North Sea: German Bight (Helgoland Mud Area) 54.052300 N 7.580400 E obligate anaerobe anoxic sampling of sediment slurry incubations at defined time points Previously collected sediments from Helgoland mud area, stored at 4ºC (near in-situ temperature) until use as starting material for incubation experiments. For the incubation experiments, anaerobic slurries were prepared in ratio 1:4 and incubated at 30ºC. Sample name identifies the unique information of each sample including the target 16S rRNA gene, incubation timepoint and state of the enrichment. 1 ml slurry in triplicates, Pooled DNA from triplicates were sequenced as 1 sample. sediment incubation at 30ºC without any amendment sampled after 105 days sequenced with bacteria PCR primers Metagenome or environmental 41855 6160440 2020-05-04 2020-05-04 2 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR288080 ECP19-2498 1008246 3835
3 SRR11671283 SAMN14820597 marine sediment Not applicable North Sea: German Bight (Helgoland Mud Area) 54.052300 N 7.580400 E obligate anaerobe anoxic sampling of sediment slurry incubations at defined time points Previously collected sediments from Helgoland mud area, stored at 4ºC (near in-situ temperature) until use as starting material for incubation experiments. For the incubation experiments, anaerobic slurries were prepared in ratio 1:4 and incubated at 30ºC. Sample name identifies the unique information of each sample including the target 16S rRNA gene, incubation timepoint and state of the enrichment. 1 ml slurry in triplicates, Pooled DNA from triplicates were sequenced as 1 sample. sediment incubation at 30ºC without any amendment sampled after 105 days sequenced with archaea PCR primers Metagenome or environmental 19833 2973256 2020-05-04 2020-05-04 3 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR005375 ECP19-2498 63477063 237172
4 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR005372 ECP19-2498 21805775 88278
5 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000090 ECP19-2498 59522375 222843
6 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000091 ECP19-2498 392964 1467
7 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000092 ECP19-2498 872292 3261
8 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000093 ECP19-2498 60878431 227850
9 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000094 ECP19-2498 1311175 4908
10 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000095 ECP19-2498 592711 2214
11 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000078 ECP19-2498 35726106 136244
12 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000079 ECP19-2498 33865731 128606
13 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000072 ECP19-2498 43110538 164772
14 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000073 ECP19-2498 834018 3206
15 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000074 ECP19-2498 1191933 4540
16 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000075 ECP19-2498 817514 3107
17 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000076 ECP19-2498 53028372 201721
18 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000077 ECP19-2498 322254 1226
19 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000070 ECP19-2498 69214301 262057
20 PRJNA681235 SAMN16946945 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091029 coli environmental/food/other CDC 2019 USA CFSAN091029 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000071 ECP19-2498 56794062 215192
21 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR288080 ECP19-598 1008246 3835
22 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000090 ECP19-598 59522375 222843
23 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000091 ECP19-598 392964 1467
24 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000092 ECP19-598 872292 3261
25 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000093 ECP19-598 60878431 227850
26 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000094 ECP19-598 1311175 4908
27 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000095 ECP19-598 592711 2214
28 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000078 ECP19-598 35726106 136244
29 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000079 ECP19-598 33865731 128606
30 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000070 ECP19-598 69214301 262057
31 PRJNA681235 SAMN16946946 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091027 coli environmental/food/other CDC 2019 USA CFSAN091027 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000071 ECP19-598 56794062 215192
32 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR288080 ECP19-798 1008246 3835
33 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000090 ECP19-798 59522375 222843
34 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000091 ECP19-798 392964 1467
35 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000092 ECP19-798 872292 3261
36 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000093 ECP19-798 60878431 227850
37 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000094 ECP19-798 1311175 4908
38 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000095 ECP19-798 592711 2214
39 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000080 ECP19-798 42230342 158320
40 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000081 ECP19-798 48201615 180220
41 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000078 ECP19-798 35726106 136244
42 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000079 ECP19-798 33865731 128606
43 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000070 ECP19-798 69214301 262057
44 PRJNA681235 SAMN16946947 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091028 coli environmental/food/other CDC 2019 USA CFSAN091028 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000071 ECP19-798 56794062 215192
45 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR288080 ECP19-198 1008246 3835
46 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR005375 ECP19-198 63477063 237172
47 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR005372 ECP19-198 21805775 88278
48 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000090 ECP19-198 59522375 222843
49 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000091 ECP19-198 392964 1467
50 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000092 ECP19-198 872292 3261
51 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000093 ECP19-198 60878431 227850
52 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000094 ECP19-198 1311175 4908
53 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000095 ECP19-198 592711 2214
54 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000078 ECP19-198 35726106 136244
55 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000079 ECP19-198 33865731 128606
56 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000072 ECP19-198 43110538 164772
57 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000073 ECP19-198 834018 3206
58 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000074 ECP19-198 1191933 4540
59 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000075 ECP19-198 817514 3107
60 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000076 ECP19-198 53028372 201721
61 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000077 ECP19-198 322254 1226
62 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000070 ECP19-198 69214301 262057
63 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000071 ECP19-198 56794062 215192
64 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000068 ECP19-198 63395546 247135
65 PRJNA681235 SAMN16956340 Escherichia coli O157:H7 83334 Pathogen.env.1.0 Escherichia PRJNA681235 CFSAN091030 coli environmental/food/other CDC 2019 USA CFSAN091030 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000069 ECP19-198 57476129 224837
66 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR288080 CJP19-D445 1008246 3835
67 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000080 CJP19-D445 42230342 158320
68 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000081 CJP19-D445 48201615 180220
69 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000078 CJP19-D445 35726106 136244
70 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000079 CJP19-D445 33865731 128606
71 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000068 CJP19-D445 63395546 247135
72 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000069 CJP19-D445 57476129 224837
73 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000066 CJP19-D445 63790620 242673
74 PRJNA681235 SAMN17131267 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091031 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000067 CJP19-D445 66936400 255351
75 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR288080 CJP19-D996 1008246 3835
76 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR287817 CJP19-D996 155025677 1414888
77 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000089 CJP19-D996 64994909 250945
78 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000088 CJP19-D996 62912540 242861
79 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000087 CJP19-D996 1051130 4049
80 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000086 CJP19-D996 525756 2047
81 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000085 CJP19-D996 436118 1684
82 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000084 CJP19-D996 466139 1803
83 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000083 CJP19-D996 1251016 4841
84 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000082 CJP19-D996 1227889 4753
85 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000080 CJP19-D996 42230342 158320
86 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000081 CJP19-D996 48201615 180220
87 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000078 CJP19-D996 35726106 136244
88 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000079 CJP19-D996 33865731 128606
89 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000068 CJP19-D996 63395546 247135
90 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000069 CJP19-D996 57476129 224837
91 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000066 CJP19-D996 63790620 242673
92 PRJNA681235 SAMN17131268 Campylobacter jejuni 197 Pathogen.env.1.0 CDC missing missing CFSAN091032 missing missing GenomeTrakr FDA Center for Food Safety and Applied Nutrition SRR000067 CJP19-D996 66936400 255351