diff test-data/metadata.tsv @ 4:2d4a2159c74b

planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/556cac4fb538
author jpayne
date Fri, 03 May 2024 01:17:43 -0400
parents 556cac4fb538
children fc77995bc4da
line wrap: on
line diff
--- a/test-data/metadata.tsv	Wed Oct 27 05:00:45 2021 -0400
+++ b/test-data/metadata.tsv	Fri May 03 01:17:43 2024 -0400
@@ -1,3 +1,92 @@
-sample	biosample_accession	isolation_source	collection_date	geo_loc_name	lat_lon	rel_to_oxygen	samp_collect_device	samp_mat_process	samp_size	source_material_id	BioSampleModel	ENA-SPOT-COUNT	ENA-BASE-COUNT	ENA-FIRST-PUBLIC	ENA-LAST-UPDATE
-SRR11671300	SAMN14820590	marine sediment	Not applicable	North Sea: German Bight (Helgoland Mud Area)	54.052300 N 7.580400 E	obligate anaerobe	anoxic sampling of sediment slurry incubations at defined time points	Previously collected sediments from Helgoland mud area, stored at 4ºC (near in-situ temperature) until use as starting material for incubation experiments. For the incubation experiments, anaerobic slurries were prepared in ratio 1:4 and incubated at 30ºC. Sample name identifies the unique information of each sample including the target 16S rRNA gene, incubation timepoint and state of the enrichment.	1 ml slurry in triplicates, Pooled DNA from triplicates were sequenced as 1 sample.	sediment incubation at 30ºC without any amendment sampled after 105 days sequenced with bacteria PCR primers	Metagenome or environmental	41855	6160440	2020-05-04	2020-05-04
-SRR11671283	SAMN14820597	marine sediment	Not applicable	North Sea: German Bight (Helgoland Mud Area)	54.052300 N 7.580400 E	obligate anaerobe	anoxic sampling of sediment slurry incubations at defined time points	Previously collected sediments from Helgoland mud area, stored at 4ºC (near in-situ temperature) until use as starting material for incubation experiments. For the incubation experiments, anaerobic slurries were prepared in ratio 1:4 and incubated at 30ºC. Sample name identifies the unique information of each sample including the target 16S rRNA gene, incubation timepoint and state of the enrichment.	1 ml slurry in triplicates, Pooled DNA from triplicates were sequenced as 1 sample.	sediment incubation at 30ºC without any amendment sampled after 105 days sequenced with archaea PCR primers	Metagenome or environmental	19833	2973256	2020-05-04	2020-05-04
+bioproject	biosample_accession	organism	taxid	package	Genus	ProjectAccession	PublicAccession	Species	attribute_package	collected_by	collection_date	geo_loc_name	isolate	isolate_name_alias	isolation_source	lat_lon	project_name	sequenced_by	sra_run_accession	strain	total_bases	total_spots
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR288080	ECP19-2498	1008246	3835
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR005375	ECP19-2498	63477063	237172
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR005372	ECP19-2498	21805775	88278
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000090	ECP19-2498	59522375	222843
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000091	ECP19-2498	392964	1467
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000092	ECP19-2498	872292	3261
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000093	ECP19-2498	60878431	227850
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000094	ECP19-2498	1311175	4908
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000095	ECP19-2498	592711	2214
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000078	ECP19-2498	35726106	136244
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000079	ECP19-2498	33865731	128606
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000072	ECP19-2498	43110538	164772
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000073	ECP19-2498	834018	3206
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000074	ECP19-2498	1191933	4540
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000075	ECP19-2498	817514	3107
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000076	ECP19-2498	53028372	201721
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000077	ECP19-2498	322254	1226
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000070	ECP19-2498	69214301	262057
+PRJNA681235	SAMN16946945	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091029	coli	environmental/food/other	CDC	2019	USA		CFSAN091029	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000071	ECP19-2498	56794062	215192
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR288080	ECP19-598	1008246	3835
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000090	ECP19-598	59522375	222843
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000091	ECP19-598	392964	1467
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000092	ECP19-598	872292	3261
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000093	ECP19-598	60878431	227850
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000094	ECP19-598	1311175	4908
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000095	ECP19-598	592711	2214
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000078	ECP19-598	35726106	136244
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000079	ECP19-598	33865731	128606
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000070	ECP19-598	69214301	262057
+PRJNA681235	SAMN16946946	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091027	coli	environmental/food/other	CDC	2019	USA		CFSAN091027	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000071	ECP19-598	56794062	215192
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR288080	ECP19-798	1008246	3835
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000090	ECP19-798	59522375	222843
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000091	ECP19-798	392964	1467
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000092	ECP19-798	872292	3261
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000093	ECP19-798	60878431	227850
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000094	ECP19-798	1311175	4908
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000095	ECP19-798	592711	2214
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000080	ECP19-798	42230342	158320
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000081	ECP19-798	48201615	180220
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000078	ECP19-798	35726106	136244
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000079	ECP19-798	33865731	128606
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000070	ECP19-798	69214301	262057
+PRJNA681235	SAMN16946947	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091028	coli	environmental/food/other	CDC	2019	USA		CFSAN091028	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000071	ECP19-798	56794062	215192
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR288080	ECP19-198	1008246	3835
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR005375	ECP19-198	63477063	237172
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR005372	ECP19-198	21805775	88278
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000090	ECP19-198	59522375	222843
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000091	ECP19-198	392964	1467
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000092	ECP19-198	872292	3261
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000093	ECP19-198	60878431	227850
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000094	ECP19-198	1311175	4908
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000095	ECP19-198	592711	2214
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000078	ECP19-198	35726106	136244
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000079	ECP19-198	33865731	128606
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000072	ECP19-198	43110538	164772
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000073	ECP19-198	834018	3206
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000074	ECP19-198	1191933	4540
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000075	ECP19-198	817514	3107
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000076	ECP19-198	53028372	201721
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000077	ECP19-198	322254	1226
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000070	ECP19-198	69214301	262057
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000071	ECP19-198	56794062	215192
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000068	ECP19-198	63395546	247135
+PRJNA681235	SAMN16956340	Escherichia coli O157:H7	83334	Pathogen.env.1.0	Escherichia	PRJNA681235	CFSAN091030	coli	environmental/food/other	CDC	2019	USA		CFSAN091030	missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000069	ECP19-198	57476129	224837
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR288080	CJP19-D445	1008246	3835
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000080	CJP19-D445	42230342	158320
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000081	CJP19-D445	48201615	180220
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000078	CJP19-D445	35726106	136244
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000079	CJP19-D445	33865731	128606
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000068	CJP19-D445	63395546	247135
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000069	CJP19-D445	57476129	224837
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000066	CJP19-D445	63790620	242673
+PRJNA681235	SAMN17131267	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091031		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000067	CJP19-D445	66936400	255351
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR288080	CJP19-D996	1008246	3835
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR287817	CJP19-D996	155025677	1414888
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000089	CJP19-D996	64994909	250945
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000088	CJP19-D996	62912540	242861
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000087	CJP19-D996	1051130	4049
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000086	CJP19-D996	525756	2047
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000085	CJP19-D996	436118	1684
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000084	CJP19-D996	466139	1803
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000083	CJP19-D996	1251016	4841
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000082	CJP19-D996	1227889	4753
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000080	CJP19-D996	42230342	158320
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000081	CJP19-D996	48201615	180220
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000078	CJP19-D996	35726106	136244
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000079	CJP19-D996	33865731	128606
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000068	CJP19-D996	63395546	247135
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000069	CJP19-D996	57476129	224837
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000066	CJP19-D996	63790620	242673
+PRJNA681235	SAMN17131268	Campylobacter jejuni	197	Pathogen.env.1.0						CDC	missing	missing	CFSAN091032		missing	missing	GenomeTrakr	FDA Center for Food Safety and Applied Nutrition	SRR000067	CJP19-D996	66936400	255351