Mercurial > repos > jpayne > bioproject_to_srr_2
diff charset_normalizer/models.py @ 7:5eb2d5e3bf22
planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/556cac4fb538
author | jpayne |
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date | Sun, 05 May 2024 23:32:17 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/charset_normalizer/models.py Sun May 05 23:32:17 2024 -0400 @@ -0,0 +1,340 @@ +from encodings.aliases import aliases +from hashlib import sha256 +from json import dumps +from typing import Any, Dict, Iterator, List, Optional, Tuple, Union + +from .constant import TOO_BIG_SEQUENCE +from .utils import iana_name, is_multi_byte_encoding, unicode_range + + +class CharsetMatch: + def __init__( + self, + payload: bytes, + guessed_encoding: str, + mean_mess_ratio: float, + has_sig_or_bom: bool, + languages: "CoherenceMatches", + decoded_payload: Optional[str] = None, + ): + self._payload: bytes = payload + + self._encoding: str = guessed_encoding + self._mean_mess_ratio: float = mean_mess_ratio + self._languages: CoherenceMatches = languages + self._has_sig_or_bom: bool = has_sig_or_bom + self._unicode_ranges: Optional[List[str]] = None + + self._leaves: List[CharsetMatch] = [] + self._mean_coherence_ratio: float = 0.0 + + self._output_payload: Optional[bytes] = None + self._output_encoding: Optional[str] = None + + self._string: Optional[str] = decoded_payload + + def __eq__(self, other: object) -> bool: + if not isinstance(other, CharsetMatch): + raise TypeError( + "__eq__ cannot be invoked on {} and {}.".format( + str(other.__class__), str(self.__class__) + ) + ) + return self.encoding == other.encoding and self.fingerprint == other.fingerprint + + def __lt__(self, other: object) -> bool: + """ + Implemented to make sorted available upon CharsetMatches items. + """ + if not isinstance(other, CharsetMatch): + raise ValueError + + chaos_difference: float = abs(self.chaos - other.chaos) + coherence_difference: float = abs(self.coherence - other.coherence) + + # Below 1% difference --> Use Coherence + if chaos_difference < 0.01 and coherence_difference > 0.02: + return self.coherence > other.coherence + elif chaos_difference < 0.01 and coherence_difference <= 0.02: + # When having a difficult decision, use the result that decoded as many multi-byte as possible. + # preserve RAM usage! + if len(self._payload) >= TOO_BIG_SEQUENCE: + return self.chaos < other.chaos + return self.multi_byte_usage > other.multi_byte_usage + + return self.chaos < other.chaos + + @property + def multi_byte_usage(self) -> float: + return 1.0 - (len(str(self)) / len(self.raw)) + + def __str__(self) -> str: + # Lazy Str Loading + if self._string is None: + self._string = str(self._payload, self._encoding, "strict") + return self._string + + def __repr__(self) -> str: + return "<CharsetMatch '{}' bytes({})>".format(self.encoding, self.fingerprint) + + def add_submatch(self, other: "CharsetMatch") -> None: + if not isinstance(other, CharsetMatch) or other == self: + raise ValueError( + "Unable to add instance <{}> as a submatch of a CharsetMatch".format( + other.__class__ + ) + ) + + other._string = None # Unload RAM usage; dirty trick. + self._leaves.append(other) + + @property + def encoding(self) -> str: + return self._encoding + + @property + def encoding_aliases(self) -> List[str]: + """ + Encoding name are known by many name, using this could help when searching for IBM855 when it's listed as CP855. + """ + also_known_as: List[str] = [] + for u, p in aliases.items(): + if self.encoding == u: + also_known_as.append(p) + elif self.encoding == p: + also_known_as.append(u) + return also_known_as + + @property + def bom(self) -> bool: + return self._has_sig_or_bom + + @property + def byte_order_mark(self) -> bool: + return self._has_sig_or_bom + + @property + def languages(self) -> List[str]: + """ + Return the complete list of possible languages found in decoded sequence. + Usually not really useful. Returned list may be empty even if 'language' property return something != 'Unknown'. + """ + return [e[0] for e in self._languages] + + @property + def language(self) -> str: + """ + Most probable language found in decoded sequence. If none were detected or inferred, the property will return + "Unknown". + """ + if not self._languages: + # Trying to infer the language based on the given encoding + # Its either English or we should not pronounce ourselves in certain cases. + if "ascii" in self.could_be_from_charset: + return "English" + + # doing it there to avoid circular import + from charset_normalizer.cd import encoding_languages, mb_encoding_languages + + languages = ( + mb_encoding_languages(self.encoding) + if is_multi_byte_encoding(self.encoding) + else encoding_languages(self.encoding) + ) + + if len(languages) == 0 or "Latin Based" in languages: + return "Unknown" + + return languages[0] + + return self._languages[0][0] + + @property + def chaos(self) -> float: + return self._mean_mess_ratio + + @property + def coherence(self) -> float: + if not self._languages: + return 0.0 + return self._languages[0][1] + + @property + def percent_chaos(self) -> float: + return round(self.chaos * 100, ndigits=3) + + @property + def percent_coherence(self) -> float: + return round(self.coherence * 100, ndigits=3) + + @property + def raw(self) -> bytes: + """ + Original untouched bytes. + """ + return self._payload + + @property + def submatch(self) -> List["CharsetMatch"]: + return self._leaves + + @property + def has_submatch(self) -> bool: + return len(self._leaves) > 0 + + @property + def alphabets(self) -> List[str]: + if self._unicode_ranges is not None: + return self._unicode_ranges + # list detected ranges + detected_ranges: List[Optional[str]] = [ + unicode_range(char) for char in str(self) + ] + # filter and sort + self._unicode_ranges = sorted(list({r for r in detected_ranges if r})) + return self._unicode_ranges + + @property + def could_be_from_charset(self) -> List[str]: + """ + The complete list of encoding that output the exact SAME str result and therefore could be the originating + encoding. + This list does include the encoding available in property 'encoding'. + """ + return [self._encoding] + [m.encoding for m in self._leaves] + + def output(self, encoding: str = "utf_8") -> bytes: + """ + Method to get re-encoded bytes payload using given target encoding. Default to UTF-8. + Any errors will be simply ignored by the encoder NOT replaced. + """ + if self._output_encoding is None or self._output_encoding != encoding: + self._output_encoding = encoding + self._output_payload = str(self).encode(encoding, "replace") + + return self._output_payload # type: ignore + + @property + def fingerprint(self) -> str: + """ + Retrieve the unique SHA256 computed using the transformed (re-encoded) payload. Not the original one. + """ + return sha256(self.output()).hexdigest() + + +class CharsetMatches: + """ + Container with every CharsetMatch items ordered by default from most probable to the less one. + Act like a list(iterable) but does not implements all related methods. + """ + + def __init__(self, results: Optional[List[CharsetMatch]] = None): + self._results: List[CharsetMatch] = sorted(results) if results else [] + + def __iter__(self) -> Iterator[CharsetMatch]: + yield from self._results + + def __getitem__(self, item: Union[int, str]) -> CharsetMatch: + """ + Retrieve a single item either by its position or encoding name (alias may be used here). + Raise KeyError upon invalid index or encoding not present in results. + """ + if isinstance(item, int): + return self._results[item] + if isinstance(item, str): + item = iana_name(item, False) + for result in self._results: + if item in result.could_be_from_charset: + return result + raise KeyError + + def __len__(self) -> int: + return len(self._results) + + def __bool__(self) -> bool: + return len(self._results) > 0 + + def append(self, item: CharsetMatch) -> None: + """ + Insert a single match. Will be inserted accordingly to preserve sort. + Can be inserted as a submatch. + """ + if not isinstance(item, CharsetMatch): + raise ValueError( + "Cannot append instance '{}' to CharsetMatches".format( + str(item.__class__) + ) + ) + # We should disable the submatch factoring when the input file is too heavy (conserve RAM usage) + if len(item.raw) <= TOO_BIG_SEQUENCE: + for match in self._results: + if match.fingerprint == item.fingerprint and match.chaos == item.chaos: + match.add_submatch(item) + return + self._results.append(item) + self._results = sorted(self._results) + + def best(self) -> Optional["CharsetMatch"]: + """ + Simply return the first match. Strict equivalent to matches[0]. + """ + if not self._results: + return None + return self._results[0] + + def first(self) -> Optional["CharsetMatch"]: + """ + Redundant method, call the method best(). Kept for BC reasons. + """ + return self.best() + + +CoherenceMatch = Tuple[str, float] +CoherenceMatches = List[CoherenceMatch] + + +class CliDetectionResult: + def __init__( + self, + path: str, + encoding: Optional[str], + encoding_aliases: List[str], + alternative_encodings: List[str], + language: str, + alphabets: List[str], + has_sig_or_bom: bool, + chaos: float, + coherence: float, + unicode_path: Optional[str], + is_preferred: bool, + ): + self.path: str = path + self.unicode_path: Optional[str] = unicode_path + self.encoding: Optional[str] = encoding + self.encoding_aliases: List[str] = encoding_aliases + self.alternative_encodings: List[str] = alternative_encodings + self.language: str = language + self.alphabets: List[str] = alphabets + self.has_sig_or_bom: bool = has_sig_or_bom + self.chaos: float = chaos + self.coherence: float = coherence + self.is_preferred: bool = is_preferred + + @property + def __dict__(self) -> Dict[str, Any]: # type: ignore + return { + "path": self.path, + "encoding": self.encoding, + "encoding_aliases": self.encoding_aliases, + "alternative_encodings": self.alternative_encodings, + "language": self.language, + "alphabets": self.alphabets, + "has_sig_or_bom": self.has_sig_or_bom, + "chaos": self.chaos, + "coherence": self.coherence, + "unicode_path": self.unicode_path, + "is_preferred": self.is_preferred, + } + + def to_json(self) -> str: + return dumps(self.__dict__, ensure_ascii=True, indent=4)