Mercurial > repos > jpayne > bioproject_to_srr_2
diff charset_normalizer/utils.py @ 7:5eb2d5e3bf22
planemo upload for repository https://toolrepo.galaxytrakr.org/view/jpayne/bioproject_to_srr_2/556cac4fb538
author | jpayne |
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date | Sun, 05 May 2024 23:32:17 -0400 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/charset_normalizer/utils.py Sun May 05 23:32:17 2024 -0400 @@ -0,0 +1,421 @@ +import importlib +import logging +import unicodedata +from codecs import IncrementalDecoder +from encodings.aliases import aliases +from functools import lru_cache +from re import findall +from typing import Generator, List, Optional, Set, Tuple, Union + +from _multibytecodec import MultibyteIncrementalDecoder + +from .constant import ( + ENCODING_MARKS, + IANA_SUPPORTED_SIMILAR, + RE_POSSIBLE_ENCODING_INDICATION, + UNICODE_RANGES_COMBINED, + UNICODE_SECONDARY_RANGE_KEYWORD, + UTF8_MAXIMAL_ALLOCATION, +) + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_accentuated(character: str) -> bool: + try: + description: str = unicodedata.name(character) + except ValueError: + return False + return ( + "WITH GRAVE" in description + or "WITH ACUTE" in description + or "WITH CEDILLA" in description + or "WITH DIAERESIS" in description + or "WITH CIRCUMFLEX" in description + or "WITH TILDE" in description + or "WITH MACRON" in description + or "WITH RING ABOVE" in description + ) + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def remove_accent(character: str) -> str: + decomposed: str = unicodedata.decomposition(character) + if not decomposed: + return character + + codes: List[str] = decomposed.split(" ") + + return chr(int(codes[0], 16)) + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def unicode_range(character: str) -> Optional[str]: + """ + Retrieve the Unicode range official name from a single character. + """ + character_ord: int = ord(character) + + for range_name, ord_range in UNICODE_RANGES_COMBINED.items(): + if character_ord in ord_range: + return range_name + + return None + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_latin(character: str) -> bool: + try: + description: str = unicodedata.name(character) + except ValueError: + return False + return "LATIN" in description + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_punctuation(character: str) -> bool: + character_category: str = unicodedata.category(character) + + if "P" in character_category: + return True + + character_range: Optional[str] = unicode_range(character) + + if character_range is None: + return False + + return "Punctuation" in character_range + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_symbol(character: str) -> bool: + character_category: str = unicodedata.category(character) + + if "S" in character_category or "N" in character_category: + return True + + character_range: Optional[str] = unicode_range(character) + + if character_range is None: + return False + + return "Forms" in character_range and character_category != "Lo" + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_emoticon(character: str) -> bool: + character_range: Optional[str] = unicode_range(character) + + if character_range is None: + return False + + return "Emoticons" in character_range or "Pictographs" in character_range + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_separator(character: str) -> bool: + if character.isspace() or character in {"|", "+", "<", ">"}: + return True + + character_category: str = unicodedata.category(character) + + return "Z" in character_category or character_category in {"Po", "Pd", "Pc"} + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_case_variable(character: str) -> bool: + return character.islower() != character.isupper() + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_cjk(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "CJK" in character_name + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_hiragana(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "HIRAGANA" in character_name + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_katakana(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "KATAKANA" in character_name + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_hangul(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "HANGUL" in character_name + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_thai(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "THAI" in character_name + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_arabic(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "ARABIC" in character_name + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_arabic_isolated_form(character: str) -> bool: + try: + character_name = unicodedata.name(character) + except ValueError: + return False + + return "ARABIC" in character_name and "ISOLATED FORM" in character_name + + +@lru_cache(maxsize=len(UNICODE_RANGES_COMBINED)) +def is_unicode_range_secondary(range_name: str) -> bool: + return any(keyword in range_name for keyword in UNICODE_SECONDARY_RANGE_KEYWORD) + + +@lru_cache(maxsize=UTF8_MAXIMAL_ALLOCATION) +def is_unprintable(character: str) -> bool: + return ( + character.isspace() is False # includes \n \t \r \v + and character.isprintable() is False + and character != "\x1A" # Why? Its the ASCII substitute character. + and character != "\ufeff" # bug discovered in Python, + # Zero Width No-Break Space located in Arabic Presentation Forms-B, Unicode 1.1 not acknowledged as space. + ) + + +def any_specified_encoding(sequence: bytes, search_zone: int = 8192) -> Optional[str]: + """ + Extract using ASCII-only decoder any specified encoding in the first n-bytes. + """ + if not isinstance(sequence, bytes): + raise TypeError + + seq_len: int = len(sequence) + + results: List[str] = findall( + RE_POSSIBLE_ENCODING_INDICATION, + sequence[: min(seq_len, search_zone)].decode("ascii", errors="ignore"), + ) + + if len(results) == 0: + return None + + for specified_encoding in results: + specified_encoding = specified_encoding.lower().replace("-", "_") + + encoding_alias: str + encoding_iana: str + + for encoding_alias, encoding_iana in aliases.items(): + if encoding_alias == specified_encoding: + return encoding_iana + if encoding_iana == specified_encoding: + return encoding_iana + + return None + + +@lru_cache(maxsize=128) +def is_multi_byte_encoding(name: str) -> bool: + """ + Verify is a specific encoding is a multi byte one based on it IANA name + """ + return name in { + "utf_8", + "utf_8_sig", + "utf_16", + "utf_16_be", + "utf_16_le", + "utf_32", + "utf_32_le", + "utf_32_be", + "utf_7", + } or issubclass( + importlib.import_module("encodings.{}".format(name)).IncrementalDecoder, + MultibyteIncrementalDecoder, + ) + + +def identify_sig_or_bom(sequence: bytes) -> Tuple[Optional[str], bytes]: + """ + Identify and extract SIG/BOM in given sequence. + """ + + for iana_encoding in ENCODING_MARKS: + marks: Union[bytes, List[bytes]] = ENCODING_MARKS[iana_encoding] + + if isinstance(marks, bytes): + marks = [marks] + + for mark in marks: + if sequence.startswith(mark): + return iana_encoding, mark + + return None, b"" + + +def should_strip_sig_or_bom(iana_encoding: str) -> bool: + return iana_encoding not in {"utf_16", "utf_32"} + + +def iana_name(cp_name: str, strict: bool = True) -> str: + cp_name = cp_name.lower().replace("-", "_") + + encoding_alias: str + encoding_iana: str + + for encoding_alias, encoding_iana in aliases.items(): + if cp_name in [encoding_alias, encoding_iana]: + return encoding_iana + + if strict: + raise ValueError("Unable to retrieve IANA for '{}'".format(cp_name)) + + return cp_name + + +def range_scan(decoded_sequence: str) -> List[str]: + ranges: Set[str] = set() + + for character in decoded_sequence: + character_range: Optional[str] = unicode_range(character) + + if character_range is None: + continue + + ranges.add(character_range) + + return list(ranges) + + +def cp_similarity(iana_name_a: str, iana_name_b: str) -> float: + if is_multi_byte_encoding(iana_name_a) or is_multi_byte_encoding(iana_name_b): + return 0.0 + + decoder_a = importlib.import_module( + "encodings.{}".format(iana_name_a) + ).IncrementalDecoder + decoder_b = importlib.import_module( + "encodings.{}".format(iana_name_b) + ).IncrementalDecoder + + id_a: IncrementalDecoder = decoder_a(errors="ignore") + id_b: IncrementalDecoder = decoder_b(errors="ignore") + + character_match_count: int = 0 + + for i in range(255): + to_be_decoded: bytes = bytes([i]) + if id_a.decode(to_be_decoded) == id_b.decode(to_be_decoded): + character_match_count += 1 + + return character_match_count / 254 + + +def is_cp_similar(iana_name_a: str, iana_name_b: str) -> bool: + """ + Determine if two code page are at least 80% similar. IANA_SUPPORTED_SIMILAR dict was generated using + the function cp_similarity. + """ + return ( + iana_name_a in IANA_SUPPORTED_SIMILAR + and iana_name_b in IANA_SUPPORTED_SIMILAR[iana_name_a] + ) + + +def set_logging_handler( + name: str = "charset_normalizer", + level: int = logging.INFO, + format_string: str = "%(asctime)s | %(levelname)s | %(message)s", +) -> None: + logger = logging.getLogger(name) + logger.setLevel(level) + + handler = logging.StreamHandler() + handler.setFormatter(logging.Formatter(format_string)) + logger.addHandler(handler) + + +def cut_sequence_chunks( + sequences: bytes, + encoding_iana: str, + offsets: range, + chunk_size: int, + bom_or_sig_available: bool, + strip_sig_or_bom: bool, + sig_payload: bytes, + is_multi_byte_decoder: bool, + decoded_payload: Optional[str] = None, +) -> Generator[str, None, None]: + if decoded_payload and is_multi_byte_decoder is False: + for i in offsets: + chunk = decoded_payload[i : i + chunk_size] + if not chunk: + break + yield chunk + else: + for i in offsets: + chunk_end = i + chunk_size + if chunk_end > len(sequences) + 8: + continue + + cut_sequence = sequences[i : i + chunk_size] + + if bom_or_sig_available and strip_sig_or_bom is False: + cut_sequence = sig_payload + cut_sequence + + chunk = cut_sequence.decode( + encoding_iana, + errors="ignore" if is_multi_byte_decoder else "strict", + ) + + # multi-byte bad cutting detector and adjustment + # not the cleanest way to perform that fix but clever enough for now. + if is_multi_byte_decoder and i > 0: + chunk_partial_size_chk: int = min(chunk_size, 16) + + if ( + decoded_payload + and chunk[:chunk_partial_size_chk] not in decoded_payload + ): + for j in range(i, i - 4, -1): + cut_sequence = sequences[j:chunk_end] + + if bom_or_sig_available and strip_sig_or_bom is False: + cut_sequence = sig_payload + cut_sequence + + chunk = cut_sequence.decode(encoding_iana, errors="ignore") + + if chunk[:chunk_partial_size_chk] in decoded_payload: + break + + yield chunk