view bio2srr.xml @ 0:02ac32a00e25

planemo upload commit 4aa8338dc8bcd7f6c0fb675044ea9d0c045ee7f3
author jpayne
date Tue, 18 Dec 2018 15:17:42 -0500
parents
children b07378e15ad9
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<tool id="bio2srr" name="Bioproject to SRR" version="0.1.0">
	<description>Retrieve SRR accessions from BioProject or BioSample.</description>
    <requirements>
    	<requirement type="package" version="2.18.4">requests</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
        $__tool_directory__/bio2srr.py "$input1" > "$output"
    ]]></command>
    <inputs>
        <param type="text" name="input1" label="BioProject or BioSample" />
    </inputs>
    <outputs>
    	<data format="txt" name="output" />
    </outputs>
    <tests>
    	<test>
    		<param name="input1" value="NOTHING" />
    		<output name="output" file="test.txt" />
    	</test>
    </tests>
    <help><![CDATA[
        Retrieve SRR accessions by BioSample or BioProject.
    ]]></help>
    <citations>
    </citations>
</tool>