Mercurial > repos > jpayne > cfsan_qaqc
annotate qa_core/sample/Input/input.xml @ 1:d1f1b65cff7a
planemo upload
| author | jpayne |
|---|---|
| date | Tue, 08 May 2018 20:46:10 -0400 |
| parents | dafec28bd37e |
| children |
| rev | line source |
|---|---|
| jpayne@0 | 1 <?xml version='1.0' encoding='UTF-8'?> |
| jpayne@0 | 2 <qaQcCoverageInput> |
| jpayne@0 | 3 <!-- |
| jpayne@0 | 4 <sequenceFileName comment="passes cov, fails quality">FNW19G43_S8_L001_R1_001.fastq.gz</sequenceFileName> |
| jpayne@0 | 5 <sequenceFileName>FNW19G43_S8_L001_R2_001.fastq.gz</sequenceFileName> |
| jpayne@0 | 6 --> |
| jpayne@0 | 7 |
| jpayne@0 | 8 |
| jpayne@0 | 9 |
| jpayne@0 | 10 |
| jpayne@0 | 11 |
| jpayne@0 | 12 <!-- <sequenceFileName comment="passes cov and quality">NY65357675_S20_L001_R1_001.fastq.gz</sequenceFileName> |
| jpayne@0 | 13 <sequenceFileName>NY65357675_S20_L001_R2_001.fastq.gz</sequenceFileName> --> |
| jpayne@0 | 14 <genus>Campylobacter</genus> |
| jpayne@0 | 15 <species>jejuni</species> |
| jpayne@0 | 16 |
| jpayne@0 | 17 |
| jpayne@0 | 18 |
| jpayne@0 | 19 |
| jpayne@0 | 20 <!-- |
| jpayne@0 | 21 <sequenceFileName comment="small file">forward.fastq.gz</sequenceFileName> |
| jpayne@0 | 22 <sequenceFileName>reverse.fastq.gz</sequenceFileName> --> |
| jpayne@0 | 23 |
| jpayne@0 | 24 |
| jpayne@0 | 25 |
| jpayne@0 | 26 |
| jpayne@0 | 27 |
| jpayne@0 | 28 |
| jpayne@0 | 29 |
| jpayne@0 | 30 |
| jpayne@0 | 31 <sequenceFileName comment="moderate size file">forward_big.fastq.gz</sequenceFileName> |
| jpayne@0 | 32 <sequenceFileName>reverse_big.fastq.gz</sequenceFileName> |
| jpayne@0 | 33 |
| jpayne@0 | 34 |
| jpayne@0 | 35 |
| jpayne@0 | 36 <!-- <sequenceFileName comment="454 file">roche_10000.sff</sequenceFileName> --> |
| jpayne@0 | 37 |
| jpayne@0 | 38 <sequencingType>Illumina MiSeq</sequencingType> |
| jpayne@0 | 39 |
| jpayne@0 | 40 <!-- <sequencingType>Roche 454</sequencingType> --> |
| jpayne@0 | 41 |
| jpayne@0 | 42 <approximateGenomeSize>4500000</approximateGenomeSize> |
| jpayne@0 | 43 <coverageThreshold>20</coverageThreshold> |
| jpayne@0 | 44 |
| jpayne@0 | 45 </qaQcCoverageInput> |