Mercurial > repos > jpayne > cfsan_qaqc
view qa_core/qa_core.sh @ 2:021864b5a0a5 tip
planemo upload
author | jpayne |
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date | Fri, 11 May 2018 10:25:14 -0400 |
parents | dafec28bd37e |
children |
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#!/bin/bash #export MODULEPATH=/etc/modulefiles:/opt/mellanox/bupc/2.2/modules:/sw/Modules/ #export GIT_SSH_COMMAND="ssh -i /home/justin.payne/.ssh/deploy_key_dev" module load qa-core module load kraken module load git #module load fastqc module load pandas module load SeqSero GIT_SSH_COMMAND="ssh -qi /sw/apps/qa-core/deploy_key_dev" git -C /sw/apps/qa-core/ pull origin deployment --quiet 2>&1>/dev/null TEMP=/isilon/gpfs_scratch python /sw/apps/qa-core/gims_core.py $1 -p 8