jpayne@0: #!/bin/bash
jpayne@0: 
jpayne@0: #export MODULEPATH=/etc/modulefiles:/opt/mellanox/bupc/2.2/modules:/sw/Modules/
jpayne@0: #export GIT_SSH_COMMAND="ssh -i /home/justin.payne/.ssh/deploy_key_dev"
jpayne@0: 
jpayne@0: module load qa-core
jpayne@0: module load kraken
jpayne@0: module load git
jpayne@0: #module load fastqc
jpayne@0: module load pandas
jpayne@0: module load SeqSero
jpayne@0: 
jpayne@0: GIT_SSH_COMMAND="ssh -qi /sw/apps/qa-core/deploy_key_dev" git -C /sw/apps/qa-core/ pull origin deployment --quiet 2>&1>/dev/null
jpayne@0: TEMP=/isilon/gpfs_scratch python /sw/apps/qa-core/gims_core.py $1 -p 8