Mercurial > repos > jpayne > gtsubsampler

comparison reads_subsampler.xml @ 1:631defc7e532

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"planemo upload for repository https://toolrepo.galaxytrakr.org/"
author jpayne
date Fri, 19 Feb 2021 14:54:11 -0500
parents b2915e7e9dfa
children aa4c9bb12501
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0:b2915e7e9dfa 1:631defc7e532
1 <tool id="reads_subsampler" name="Subsample FASTQ Reads" version="1.0.0" python_template_version="3.5"> 1 <tool id="reads_subsampler" name="Subsample FASTQ Reads" version="1.0.0" python_template_version="3.5">
2 <description>to reduce excess genomic coverage</description> 2 <description>to reduce excess genomic coverage</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.7">python</requirement>
4 </requirements> 5 </requirements>
5 <command detect_errors="exit_code"><![CDATA[ 6 <command detect_errors="exit_code"><![CDATA[
6 #if $reads.reads_select == 'collection' 7 #if $reads.reads_select == 'collection'
7 python3 ${__tool_directory__}/subsamplr.py '$reads.coll.forward' '$reads.coll.reverse' '$downsampled.forward' '$downsampled.reverse' $coverage $genome_size '$seed' 8 python3 ${__tool_directory__}/subsamplr.py '$reads.coll.forward' '$reads.coll.reverse' '$downsampled.forward' '$downsampled.reverse' $coverage $genome_size '$seed'
8 #else 9 #else