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annotate Makefile @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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1 .PHONY: help
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2
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3 help: ## Show this help message
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4 @echo "Usage: make [target]"
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5 @echo ""
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6 @echo "Targets:"
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7 @grep -E '^[a-zA-Z_-]+:.*?## ' $(MAKEFILE_LIST) | \
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8 awk 'BEGIN {FS = ":.*?## "}; {printf " %-10s %s\n", $$1, $$2}'
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10 .setup_done: ## Set up development environment
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11 @echo "Setting up development environment..."
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12 pipx install planemo
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13 @touch .setup_done
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15 test: .setup_done ## Run tests
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16 @echo "Running tests..."
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17 planemo t --no_wait --galaxy_branch release_24.2 --skip_venv --biocontainers --job_config_file job_conf.yml --job_output_files ./.testing
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18
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19 lint: .setup_done ## Run linter
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20 @echo "Running linter..."
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21 planemo l
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23 upload: .setup_done ## Upload package
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24 @echo "Uploading package..."
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25 planemo shed_update --shed_target toolrepo --force_repository_creation