Mercurial > repos > jpayne > refchooser

annotate test-data/test/resistance/NCTC11351_resfinder/pheno_table.txt @ 0:91bc7378c1c5 draft

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author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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1 # ResFinder phenotype results.
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2 # Sample: NCTC11351.fa
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3 #
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4 # The phenotype 'No resistance' should be interpreted with
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5 # caution, as it only means that nothing in the used
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6 # database indicate resistance, but resistance could exist
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7 # from 'unknown' or not yet implemented sources.
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8 #
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9 # The 'Match' column stores one of the integers 0, 1, 2, 3.
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10 # 0: No match found
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11 # 1: Match < 100% ID AND match length < ref length
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12 # 2: Match = 100% ID AND match length < ref length
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13 # 3: Match = 100% ID AND match length = ref length
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14 # If several hits causing the same resistance are found,
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15 # the highest number will be stored in the 'Match' column.
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16
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17 # Antimicrobial Class WGS-predicted phenotype Match Genetic background
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18 gentamicin aminoglycoside No resistance 0
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19 tobramycin aminoglycoside No resistance 0
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20 streptomycin aminoglycoside No resistance 0
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21 amikacin aminoglycoside No resistance 0
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22 isepamicin aminoglycoside No resistance 0
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23 dibekacin aminoglycoside No resistance 0
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24 kanamycin aminoglycoside No resistance 0
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25 neomycin aminoglycoside No resistance 0
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26 lividomycin aminoglycoside No resistance 0
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27 paromomycin aminoglycoside No resistance 0
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28 ribostamycin aminoglycoside No resistance 0
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29 unknown aminoglycoside aminoglycoside No resistance 0
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30 butiromycin aminoglycoside No resistance 0
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31 butirosin aminoglycoside No resistance 0
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32 hygromycin aminoglycoside No resistance 0
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33 netilmicin aminoglycoside No resistance 0
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34 apramycin aminoglycoside No resistance 0
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35 sisomicin aminoglycoside No resistance 0
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36 arbekacin aminoglycoside No resistance 0
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37 kasugamycin aminoglycoside No resistance 0
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38 astromicin aminoglycoside No resistance 0
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39 fortimicin aminoglycoside No resistance 0
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40 spectinomycin aminocyclitol No resistance 0
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41 fluoroquinolone quinolone No resistance 0
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42 ciprofloxacin quinolone No resistance 0
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43 unknown quinolone quinolone No resistance 0
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44 nalidixic acid quinolone No resistance 0
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45 amoxicillin beta-lactam No resistance 0
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46 amoxicillin+clavulanic acid beta-lactam No resistance 0
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47 ampicillin beta-lactam No resistance 0
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48 ampicillin+clavulanic acid beta-lactam No resistance 0
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49 cefepime beta-lactam No resistance 0
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50 cefixime beta-lactam No resistance 0
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51 cefotaxime beta-lactam No resistance 0
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52 cefoxitin beta-lactam No resistance 0
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53 ceftazidime beta-lactam No resistance 0
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54 ertapenem beta-lactam No resistance 0
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55 imipenem beta-lactam No resistance 0
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56 meropenem beta-lactam No resistance 0
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57 piperacillin beta-lactam No resistance 0
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58 piperacillin+tazobactam beta-lactam No resistance 0
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59 unknown beta-lactam beta-lactam No resistance 0
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60 aztreonam beta-lactam No resistance 0
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61 cefotaxime+clavulanic acid beta-lactam No resistance 0
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62 temocillin beta-lactam No resistance 0
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63 ticarcillin beta-lactam No resistance 0
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64 ceftazidime+avibactam beta-lactam No resistance 0
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65 penicillin beta-lactam No resistance 0
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66 ceftriaxone beta-lactam No resistance 0
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67 ticarcillin+clavulanic acid beta-lactam No resistance 0
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68 cephalothin beta-lactam No resistance 0
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69 cephalotin beta-lactam No resistance 0
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70 piperacillin+clavulanic acid beta-lactam No resistance 0
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71 ceftiofur under_development No resistance 0
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72 sulfamethoxazole folate pathway antagonist No resistance 0
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73 trimethoprim folate pathway antagonist No resistance 0
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74 fosfomycin fosfomycin No resistance 0
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75 vancomycin glycopeptide No resistance 0
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76 teicoplanin glycopeptide No resistance 0
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77 bleomycin glycopeptide No resistance 0
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78 lincomycin lincosamide No resistance 0
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79 clindamycin lincosamide No resistance 0
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80 dalfopristin streptogramin a No resistance 0
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81 pristinamycin iia streptogramin a No resistance 0
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82 virginiamycin m streptogramin a No resistance 0
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83 quinupristin+dalfopristin streptogramin a No resistance 0
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84 tiamulin pleuromutilin No resistance 0
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85 carbomycin macrolide No resistance 0
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86 erythromycin macrolide No resistance 0
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87 azithromycin macrolide No resistance 0
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88 oleandomycin macrolide No resistance 0
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89 spiramycin macrolide No resistance 0
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90 tylosin macrolide No resistance 0
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91 telithromycin macrolide No resistance 0
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92 tetracycline tetracycline No resistance 0
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93 doxycycline tetracycline No resistance 0
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94 minocycline tetracycline No resistance 0
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95 tigecycline tetracycline No resistance 0
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96 quinupristin streptogramin b No resistance 0
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97 pristinamycin ia streptogramin b No resistance 0
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98 virginiamycin s streptogramin b No resistance 0
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99 linezolid oxazolidinone No resistance 0
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100 chloramphenicol amphenicol No resistance 0
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101 florfenicol amphenicol No resistance 0
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102 colistin polymyxin No resistance 0
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103 fusidic acid steroid antibacterial No resistance 0
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104 mupirocin pseudomonic acid No resistance 0
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105 rifampicin rifamycin No resistance 0
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106 metronidazole nitroimidazole No resistance 0
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107 narasin ionophores No resistance 0
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108 salinomycin ionophores No resistance 0
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109 maduramicin ionophores No resistance 0