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annotate tool-data/all_fasta.loc.sample @ 1:dcf6c2409ebb draft default tip

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planemo upload commit 0afa3db59f582bebcb1aed2cc0f3dc2ade807d86-dirty
author jpayne
date Mon, 08 Dec 2025 20:28:57 +0000
parents 91bc7378c1c5
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Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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1 #This file lists the locations and dbkeys of all the fasta files
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
jpayne
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2 #under the "genome" directory (a directory that contains a directory
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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3 #for each build). The script extract_fasta.py will generate the file
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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4 #all_fasta.loc. This file has the format (white space characters are
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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5 #TAB characters):
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jpayne
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6 #
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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7 #<unique_build_id> <dbkey> <display_name> <file_path>
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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8 #
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
jpayne
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9 #So, all_fasta.loc could look something like this:
91bc7378c1c5 planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
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10 #test1 test1 Test-Genome ./test-data/test1.fa