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comparison test-data/test/resistance/UCLA_1626_resfinder/pheno_table.txt @ 0:91bc7378c1c5 draft

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planemo upload commit c5b9a5678302366ab392fc9b24104509beb07c38-dirty
author jpayne
date Mon, 11 Aug 2025 15:37:26 +0000
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1 # ResFinder phenotype results.
2 # Sample: UCLA_1626.fa
3 #
4 # The phenotype 'No resistance' should be interpreted with
5 # caution, as it only means that nothing in the used
6 # database indicate resistance, but resistance could exist
7 # from 'unknown' or not yet implemented sources.
8 #
9 # The 'Match' column stores one of the integers 0, 1, 2, 3.
10 # 0: No match found
11 # 1: Match < 100% ID AND match length < ref length
12 # 2: Match = 100% ID AND match length < ref length
13 # 3: Match = 100% ID AND match length = ref length
14 # If several hits causing the same resistance are found,
15 # the highest number will be stored in the 'Match' column.
16
17 # Antimicrobial Class WGS-predicted phenotype Match Genetic background
18 gentamicin aminoglycoside No resistance 0
19 tobramycin aminoglycoside No resistance 0
20 streptomycin aminoglycoside No resistance 0
21 amikacin aminoglycoside No resistance 0
22 isepamicin aminoglycoside No resistance 0
23 dibekacin aminoglycoside No resistance 0
24 kanamycin aminoglycoside No resistance 0
25 neomycin aminoglycoside No resistance 0
26 lividomycin aminoglycoside No resistance 0
27 paromomycin aminoglycoside No resistance 0
28 ribostamycin aminoglycoside No resistance 0
29 unknown aminoglycoside aminoglycoside No resistance 0
30 butiromycin aminoglycoside No resistance 0
31 butirosin aminoglycoside No resistance 0
32 hygromycin aminoglycoside No resistance 0
33 netilmicin aminoglycoside No resistance 0
34 apramycin aminoglycoside No resistance 0
35 sisomicin aminoglycoside No resistance 0
36 arbekacin aminoglycoside No resistance 0
37 kasugamycin aminoglycoside No resistance 0
38 astromicin aminoglycoside No resistance 0
39 fortimicin aminoglycoside No resistance 0
40 spectinomycin aminocyclitol No resistance 0
41 fluoroquinolone quinolone No resistance 0
42 ciprofloxacin quinolone No resistance 0
43 unknown quinolone quinolone No resistance 0
44 nalidixic acid quinolone No resistance 0
45 amoxicillin beta-lactam Resistant 2 blaOXA-61 (blaOXA-61_AY587956)
46 amoxicillin+clavulanic acid beta-lactam Resistant 2 blaOXA-61 (blaOXA-61_AY587956)
47 ampicillin beta-lactam Resistant 2 blaOXA-61 (blaOXA-61_AY587956)
48 ampicillin+clavulanic acid beta-lactam Resistant 2 blaOXA-61 (blaOXA-61_AY587956)
49 cefepime beta-lactam No resistance 0
50 cefixime beta-lactam No resistance 0
51 cefotaxime beta-lactam No resistance 0
52 cefoxitin beta-lactam No resistance 0
53 ceftazidime beta-lactam No resistance 0
54 ertapenem beta-lactam No resistance 0
55 imipenem beta-lactam No resistance 0
56 meropenem beta-lactam No resistance 0
57 piperacillin beta-lactam No resistance 0
58 piperacillin+tazobactam beta-lactam No resistance 0
59 unknown beta-lactam beta-lactam Resistant 2 blaOXA-193 (blaOXA-193_CP013032), blaOXA-489 (blaOXA-489_CP013733), blaOXA-453 (blaOXA-453_KR061507), blaOXA-452 (blaOXA-452_KR061505), blaOXA-451 (blaOXA-451_KR061504), blaOXA-450 (blaOXA-450_KR061502)
60 aztreonam beta-lactam No resistance 0
61 cefotaxime+clavulanic acid beta-lactam No resistance 0
62 temocillin beta-lactam No resistance 0
63 ticarcillin beta-lactam No resistance 0
64 ceftazidime+avibactam beta-lactam No resistance 0
65 penicillin beta-lactam No resistance 0
66 ceftriaxone beta-lactam No resistance 0
67 ticarcillin+clavulanic acid beta-lactam No resistance 0
68 cephalothin beta-lactam No resistance 0
69 cephalotin beta-lactam No resistance 0
70 piperacillin+clavulanic acid beta-lactam No resistance 0
71 ceftiofur under_development No resistance 0
72 sulfamethoxazole folate pathway antagonist No resistance 0
73 trimethoprim folate pathway antagonist No resistance 0
74 fosfomycin fosfomycin No resistance 0
75 vancomycin glycopeptide No resistance 0
76 teicoplanin glycopeptide No resistance 0
77 bleomycin glycopeptide No resistance 0
78 lincomycin lincosamide No resistance 0
79 clindamycin lincosamide No resistance 0
80 dalfopristin streptogramin a No resistance 0
81 pristinamycin iia streptogramin a No resistance 0
82 virginiamycin m streptogramin a No resistance 0
83 quinupristin+dalfopristin streptogramin a No resistance 0
84 tiamulin pleuromutilin No resistance 0
85 carbomycin macrolide No resistance 0
86 erythromycin macrolide No resistance 0
87 azithromycin macrolide No resistance 0
88 oleandomycin macrolide No resistance 0
89 spiramycin macrolide No resistance 0
90 tylosin macrolide No resistance 0
91 telithromycin macrolide No resistance 0
92 tetracycline tetracycline Resistant 3 tet(O) (tet(O)_M18896)
93 doxycycline tetracycline Resistant 3 tet(O) (tet(O)_M18896)
94 minocycline tetracycline Resistant 3 tet(O) (tet(O)_M18896)
95 tigecycline tetracycline No resistance 0
96 quinupristin streptogramin b No resistance 0
97 pristinamycin ia streptogramin b No resistance 0
98 virginiamycin s streptogramin b No resistance 0
99 linezolid oxazolidinone No resistance 0
100 chloramphenicol amphenicol No resistance 0
101 florfenicol amphenicol No resistance 0
102 colistin polymyxin No resistance 0
103 fusidic acid steroid antibacterial No resistance 0
104 mupirocin pseudomonic acid No resistance 0
105 rifampicin rifamycin No resistance 0
106 metronidazole nitroimidazole No resistance 0
107 narasin ionophores No resistance 0
108 salinomycin ionophores No resistance 0
109 maduramicin ionophores No resistance 0