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comparison test-data/test/resistance/NCTC11351_resfinder/pheno_table.txt @ 1:dcf6c2409ebb draft default tip
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| author | jpayne |
|---|---|
| date | Mon, 08 Dec 2025 20:28:57 +0000 |
| parents | 91bc7378c1c5 |
| children |
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| 0:91bc7378c1c5 | 1:dcf6c2409ebb |
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| 1 # ResFinder phenotype results. | |
| 2 # Sample: NCTC11351.fa | |
| 3 # | |
| 4 # The phenotype 'No resistance' should be interpreted with | |
| 5 # caution, as it only means that nothing in the used | |
| 6 # database indicate resistance, but resistance could exist | |
| 7 # from 'unknown' or not yet implemented sources. | |
| 8 # | |
| 9 # The 'Match' column stores one of the integers 0, 1, 2, 3. | |
| 10 # 0: No match found | |
| 11 # 1: Match < 100% ID AND match length < ref length | |
| 12 # 2: Match = 100% ID AND match length < ref length | |
| 13 # 3: Match = 100% ID AND match length = ref length | |
| 14 # If several hits causing the same resistance are found, | |
| 15 # the highest number will be stored in the 'Match' column. | |
| 16 | |
| 17 # Antimicrobial Class WGS-predicted phenotype Match Genetic background | |
| 18 gentamicin aminoglycoside No resistance 0 | |
| 19 tobramycin aminoglycoside No resistance 0 | |
| 20 streptomycin aminoglycoside No resistance 0 | |
| 21 amikacin aminoglycoside No resistance 0 | |
| 22 isepamicin aminoglycoside No resistance 0 | |
| 23 dibekacin aminoglycoside No resistance 0 | |
| 24 kanamycin aminoglycoside No resistance 0 | |
| 25 neomycin aminoglycoside No resistance 0 | |
| 26 lividomycin aminoglycoside No resistance 0 | |
| 27 paromomycin aminoglycoside No resistance 0 | |
| 28 ribostamycin aminoglycoside No resistance 0 | |
| 29 unknown aminoglycoside aminoglycoside No resistance 0 | |
| 30 butiromycin aminoglycoside No resistance 0 | |
| 31 butirosin aminoglycoside No resistance 0 | |
| 32 hygromycin aminoglycoside No resistance 0 | |
| 33 netilmicin aminoglycoside No resistance 0 | |
| 34 apramycin aminoglycoside No resistance 0 | |
| 35 sisomicin aminoglycoside No resistance 0 | |
| 36 arbekacin aminoglycoside No resistance 0 | |
| 37 kasugamycin aminoglycoside No resistance 0 | |
| 38 astromicin aminoglycoside No resistance 0 | |
| 39 fortimicin aminoglycoside No resistance 0 | |
| 40 spectinomycin aminocyclitol No resistance 0 | |
| 41 fluoroquinolone quinolone No resistance 0 | |
| 42 ciprofloxacin quinolone No resistance 0 | |
| 43 unknown quinolone quinolone No resistance 0 | |
| 44 nalidixic acid quinolone No resistance 0 | |
| 45 amoxicillin beta-lactam No resistance 0 | |
| 46 amoxicillin+clavulanic acid beta-lactam No resistance 0 | |
| 47 ampicillin beta-lactam No resistance 0 | |
| 48 ampicillin+clavulanic acid beta-lactam No resistance 0 | |
| 49 cefepime beta-lactam No resistance 0 | |
| 50 cefixime beta-lactam No resistance 0 | |
| 51 cefotaxime beta-lactam No resistance 0 | |
| 52 cefoxitin beta-lactam No resistance 0 | |
| 53 ceftazidime beta-lactam No resistance 0 | |
| 54 ertapenem beta-lactam No resistance 0 | |
| 55 imipenem beta-lactam No resistance 0 | |
| 56 meropenem beta-lactam No resistance 0 | |
| 57 piperacillin beta-lactam No resistance 0 | |
| 58 piperacillin+tazobactam beta-lactam No resistance 0 | |
| 59 unknown beta-lactam beta-lactam No resistance 0 | |
| 60 aztreonam beta-lactam No resistance 0 | |
| 61 cefotaxime+clavulanic acid beta-lactam No resistance 0 | |
| 62 temocillin beta-lactam No resistance 0 | |
| 63 ticarcillin beta-lactam No resistance 0 | |
| 64 ceftazidime+avibactam beta-lactam No resistance 0 | |
| 65 penicillin beta-lactam No resistance 0 | |
| 66 ceftriaxone beta-lactam No resistance 0 | |
| 67 ticarcillin+clavulanic acid beta-lactam No resistance 0 | |
| 68 cephalothin beta-lactam No resistance 0 | |
| 69 cephalotin beta-lactam No resistance 0 | |
| 70 piperacillin+clavulanic acid beta-lactam No resistance 0 | |
| 71 ceftiofur under_development No resistance 0 | |
| 72 sulfamethoxazole folate pathway antagonist No resistance 0 | |
| 73 trimethoprim folate pathway antagonist No resistance 0 | |
| 74 fosfomycin fosfomycin No resistance 0 | |
| 75 vancomycin glycopeptide No resistance 0 | |
| 76 teicoplanin glycopeptide No resistance 0 | |
| 77 bleomycin glycopeptide No resistance 0 | |
| 78 lincomycin lincosamide No resistance 0 | |
| 79 clindamycin lincosamide No resistance 0 | |
| 80 dalfopristin streptogramin a No resistance 0 | |
| 81 pristinamycin iia streptogramin a No resistance 0 | |
| 82 virginiamycin m streptogramin a No resistance 0 | |
| 83 quinupristin+dalfopristin streptogramin a No resistance 0 | |
| 84 tiamulin pleuromutilin No resistance 0 | |
| 85 carbomycin macrolide No resistance 0 | |
| 86 erythromycin macrolide No resistance 0 | |
| 87 azithromycin macrolide No resistance 0 | |
| 88 oleandomycin macrolide No resistance 0 | |
| 89 spiramycin macrolide No resistance 0 | |
| 90 tylosin macrolide No resistance 0 | |
| 91 telithromycin macrolide No resistance 0 | |
| 92 tetracycline tetracycline No resistance 0 | |
| 93 doxycycline tetracycline No resistance 0 | |
| 94 minocycline tetracycline No resistance 0 | |
| 95 tigecycline tetracycline No resistance 0 | |
| 96 quinupristin streptogramin b No resistance 0 | |
| 97 pristinamycin ia streptogramin b No resistance 0 | |
| 98 virginiamycin s streptogramin b No resistance 0 | |
| 99 linezolid oxazolidinone No resistance 0 | |
| 100 chloramphenicol amphenicol No resistance 0 | |
| 101 florfenicol amphenicol No resistance 0 | |
| 102 colistin polymyxin No resistance 0 | |
| 103 fusidic acid steroid antibacterial No resistance 0 | |
| 104 mupirocin pseudomonic acid No resistance 0 | |
| 105 rifampicin rifamycin No resistance 0 | |
| 106 metronidazole nitroimidazole No resistance 0 | |
| 107 narasin ionophores No resistance 0 | |
| 108 salinomycin ionophores No resistance 0 | |
| 109 maduramicin ionophores No resistance 0 |