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annotate SeqSero2S/setup.py @ 20:4dbbf92ff30a draft

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planemo upload commit 936a627c4fc706080f07ec678f89e8256a7e7895-dirty
author jpayne
date Fri, 15 May 2026 17:55:16 +0000
parents cfc91e1d2c9b
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1 import os, sys
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2 from distutils.core import setup
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3 from setuptools import find_packages
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4
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5 def readme():
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6 with open('README.md') as f:
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7 return f.read()
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8
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9 setup(name='SeqSero2S',
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10 #version=open("version.py").readlines()[-1].split()[-1].strip("\"'"),
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11 version='1.1.4',
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12 description='Salmonella serotyping',
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13 long_description=readme(),
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14 classifiers=[
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15 'Development Status :: 3 - Alpha',
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16 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
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17 'Programming Language :: Python :: 3',
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18 'Topic :: Text Processing :: Linguistic',
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19 ],
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20 keywords='Salmonella serotyping bioinformatics WGS',
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21 url='https://github.com/denglab/SeqSero2S/',
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22 author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng',
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23 author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu',
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24 license='GPLv2',
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25 scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions_SS2S.py","bin/Initial_Conditions_SS2.py","bin/SeqSero2S.py","bin/SeqSero2_update_kmer_database.py"],
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26 packages=[""],
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27 include_package_data = True,
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28 install_requires=['biopython~=1.73'],
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29 data_files=[("seqsero2s_db",["seqsero2s_db/mlst.pickle","seqsero2s_db/antigens.pickle","seqsero2s_db/H_and_O_and_specific_genes.fasta","seqsero2s_db/invA_mers_dict","seqsero2s_db/special.pickle"]),("seqsero2s_db/kmer",["seqsero2s_db/kmer/salmonella_35.txt","seqsero2s_db/kmer/salmonella_config.txt","seqsero2s_db/kmer/salmonella_hemD.tfa","seqsero2s_db/kmer/salmonella.log","seqsero2s_db/kmer/salmonella_purE.tfa","seqsero2s_db/kmer/salmonella_thrA.tfa","seqsero2s_db/kmer/salmonella_aroC.tfa","seqsero2s_db/kmer/salmonella_dnaN.tfa","seqsero2s_db/kmer/salmonella_hisD.tfa","seqsero2s_db/kmer/salmonella_profile.txt","seqsero2s_db/kmer/salmonella_sucA.tfa","seqsero2s_db/kmer/salmonella_weight.txt"])],
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30 zip_safe=False,
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31 )