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comparison seqsero2S.xml @ 2:7a2bd16bd8d9 draft default tip

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planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
author jpayne
date Wed, 21 Jan 2026 20:40:57 +0000
parents 46d49cf8db7d
children
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1:46d49cf8db7d 2:7a2bd16bd8d9
34 #set $forward = './forward.fastq' 34 #set $forward = './forward.fastq'
35 #end if 35 #end if
36 ln -s $forward ${name}_1.fastq; 36 ln -s $forward ${name}_1.fastq;
37 ln -s $reverse ${name}_2.fastq; 37 ln -s $reverse ${name}_2.fastq;
38 #else 38 #else
39 #set $name = "$reads.assembly.name.replace(' ', '_')" 39 #set $name = $reads.assembly.name.replace(' ', '_')
40 #set $ga = "$reads.assembly" 40 #set $infile = $name + ".fasta"
41 #set $infile = $name + .fasta 41 ln -s $reads.assembly "$infile";
42 ln -s $ga "$infile";
43 #set $tval = 4 42 #set $tval = 4
44 #set $mode='k' 43 #set $mode='k'
45 #end if 44 #end if
46 echo "$name" ; 45 echo "$name" ;
47 echo "-=-=-=-=-" ; 46 echo "-=-=-=-=-" ;