Mercurial > repos > jpayne > seqsero2s
comparison SeqSero2S/seqsero2s_db/kmer/salmonella.log @ 21:6041d8f4eeeb draft default tip
planemo upload commit 24ade7c48613defc1061058737056f0bc64e7709
| author | galaxytrakr |
|---|---|
| date | Fri, 15 May 2026 19:51:16 +0000 |
| parents | 4dbbf92ff30a |
| children |
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| 20:4dbbf92ff30a | 21:6041d8f4eeeb |
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| 1 06/26/2023 09:03:06 AM singleSampleTool : GDUTNS--Y1.R1.raw.fastq.gz and GDUTNS--Y1.R2.raw.fastq.gz | |
| 2 06/26/2023 09:03:06 AM singleSampleTool : paired True | |
| 3 06/26/2023 09:03:06 AM singleSampleTool : fastq1 start | |
| 4 06/26/2023 09:03:06 AM singleFileTool :GDUTNS--Y1.R1.raw.fastq.gz | |
| 5 06/26/2023 09:03:06 AM singleFileTool : fastq | |
| 6 06/26/2023 09:03:06 AM fileExplorer :GDUTNS--Y1.R1.raw.fastq.gz | |
| 7 06/26/2023 09:03:54 AM singleSampleTool : fastq1 done | |
| 8 06/26/2023 09:03:54 AM singleSampleTool : fastq2 start | |
| 9 06/26/2023 09:03:54 AM singleFileTool :GDUTNS--Y1.R2.raw.fastq.gz | |
| 10 06/26/2023 09:03:54 AM singleFileTool : fastq | |
| 11 06/26/2023 09:03:54 AM fileExplorer :GDUTNS--Y1.R2.raw.fastq.gz | |
| 12 06/26/2023 09:04:48 AM singleSampleTool : fastq2 done | |
| 13 06/26/2023 09:04:48 AM singleSampleTool : weightedProfile start | |
| 14 06/26/2023 09:04:48 AM weightedProf | |
| 15 06/26/2023 09:04:48 AM singleSampleTool : weightedProfile finished | |
| 16 06/26/2023 09:04:48 AM singleSampleTool : getMaxCount start | |
| 17 06/26/2023 09:04:48 AM getMaxCount | |
| 18 06/26/2023 09:04:48 AM Max Support :GDUTNS--Y : {'purE': {'5': 54640}, 'dnaN': {'8': 75064}, 'thrA': {'15': 80816}, 'sucA': {'11': 61141}, 'hemD': {'11': 72516}, 'aroC': {'8': 77112}, 'hisD': {'11': 51911}} | |
| 19 06/26/2023 09:04:48 AM Second Max Support :GDUTNS--Y : {'purE': {'4': 48207, '456': 48207}, 'dnaN': {'1': 58680, '492': 58680}, 'thrA': {'10': 63003}, 'sucA': {'9': 58437, '46': 58437, '109': 58437, '197': 58437, '413': 58437, '570': 58437, '925': 58437, '1060': 58437}, 'hemD': {'3': 65987}, 'aroC': {'7': 67451}, 'hisD': {'1': 40164, '353': 40164}} | |
| 20 06/26/2023 09:04:48 AM singleSampleTool : getMaxCount end | |
| 21 06/26/2023 09:04:48 AM singleSampleTool : findST start | |
| 22 06/26/2023 09:04:48 AM findST | |
| 23 06/26/2023 09:04:48 AM singleSampleTool : findST end | |
| 24 06/26/2023 09:04:48 AM Command :['/home/shaoting/.conda/envs/seqsero2s/bin/stringMLST.py', '--predict', '-P', 'kmer/salmonella', '-1', 'GDUTNS--Y1.R1.raw.fastq.gz', '-2', 'GDUTNS--Y1.R2.raw.fastq.gz', '-o', 'GDUTNS--Y1_stringMLST.txt'] |