Mercurial > repos > jpayne > seqsero2s
comparison SeqSero2S/setup.py @ 21:6041d8f4eeeb draft default tip
planemo upload commit 24ade7c48613defc1061058737056f0bc64e7709
| author | galaxytrakr |
|---|---|
| date | Fri, 15 May 2026 19:51:16 +0000 |
| parents | 4dbbf92ff30a |
| children |
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| 20:4dbbf92ff30a | 21:6041d8f4eeeb |
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| 1 import os, sys | |
| 2 from distutils.core import setup | |
| 3 from setuptools import find_packages | |
| 4 | |
| 5 def readme(): | |
| 6 with open('README.md') as f: | |
| 7 return f.read() | |
| 8 | |
| 9 setup(name='SeqSero2S', | |
| 10 #version=open("version.py").readlines()[-1].split()[-1].strip("\"'"), | |
| 11 version='1.1.4', | |
| 12 description='Salmonella serotyping', | |
| 13 long_description=readme(), | |
| 14 classifiers=[ | |
| 15 'Development Status :: 3 - Alpha', | |
| 16 'License :: OSI Approved :: GNU General Public License v2 (GPLv2)', | |
| 17 'Programming Language :: Python :: 3', | |
| 18 'Topic :: Text Processing :: Linguistic', | |
| 19 ], | |
| 20 keywords='Salmonella serotyping bioinformatics WGS', | |
| 21 url='https://github.com/denglab/SeqSero2S/', | |
| 22 author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng', | |
| 23 author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu', | |
| 24 license='GPLv2', | |
| 25 scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions_SS2S.py","bin/Initial_Conditions_SS2.py","bin/SeqSero2S.py","bin/SeqSero2_update_kmer_database.py"], | |
| 26 packages=[""], | |
| 27 include_package_data = True, | |
| 28 install_requires=['biopython~=1.73'], | |
| 29 data_files=[("seqsero2s_db",["seqsero2s_db/mlst.pickle","seqsero2s_db/antigens.pickle","seqsero2s_db/H_and_O_and_specific_genes.fasta","seqsero2s_db/invA_mers_dict","seqsero2s_db/special.pickle"]),("seqsero2s_db/kmer",["seqsero2s_db/kmer/salmonella_35.txt","seqsero2s_db/kmer/salmonella_config.txt","seqsero2s_db/kmer/salmonella_hemD.tfa","seqsero2s_db/kmer/salmonella.log","seqsero2s_db/kmer/salmonella_purE.tfa","seqsero2s_db/kmer/salmonella_thrA.tfa","seqsero2s_db/kmer/salmonella_aroC.tfa","seqsero2s_db/kmer/salmonella_dnaN.tfa","seqsero2s_db/kmer/salmonella_hisD.tfa","seqsero2s_db/kmer/salmonella_profile.txt","seqsero2s_db/kmer/salmonella_sucA.tfa","seqsero2s_db/kmer/salmonella_weight.txt"])], | |
| 30 zip_safe=False, | |
| 31 ) |