--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/misc/bioconda-recipes-seqsero2s-meta.yml	Fri May 15 11:44:48 2026 +0000
@@ -0,0 +1,67 @@
+{% set name = "SeqSero2S" %}
+{% set version = "1.1.4" %}
+{% set release = "89f1f5aca7a8819ee96239592fedd2e737036ada" %}
+{% set sha256 = "995f1815cc6cee7b8e37604b068bbec673e2ee8880e41adf6df0350966fe4c65" %}
+
+package:
+  name: {{ name|lower }}
+  version: {{ version }}
+
+source:
+  url: https://github.com/LSTUGA/SeqSero2S/archive/refs/tags/v{{ version }}.tar.gz
+  sha256: {{ sha256 }}
+
+build:
+  number: 2
+  noarch: python
+  script:
+    - {{ PYTHON }} -m pip install . -vv --no-deps --no-build-isolation --no-cache-dir
+    # patch stringMLST.py log path: replace dbPrefix reference with cwd to avoid
+    # patches ALL occurrences (at line 1464 and predict section at line 1478).
+    - bash $RECIPE_DIR/patch_stringmlst.sh
+  run_exports:
+    - {{ pin_subpackage(name|lower, max_pin="x.x") }}
+
+requirements:
+  host:
+    - python >=3
+    - pip
+    - setuptools
+    - stringmlst >=0.6
+  run:
+    - python >=3
+    - blast >=2.2
+    - zstd         # libzstd.so.1 required by blastn binary
+    - samtools
+    - bedtools >=2.17
+    - sra-tools >=2.8
+    - spades >=3.9
+    - salmid
+    - bwa >=0.7
+    - seqtk >=1.3
+    - stringmlst >=0.6
+    - mlst >=2.32.2
+
+test:
+  commands:
+    - SeqSero2S.py -h
+    - blastn -help
+    - SalmID.py -h
+    - mlst -h
+
+about:
+  home: "https://github.com/LSTUGA/{{ name }}"
+  license: "GPL-2.0-or-later"
+  license_family: GPL
+  license_file: 'LICENSE'
+  summary: "Simplified Salmonella serotype prediction from genome sequencing data"
+  dev_url: "https://github.com/LSTUGA/{{ name }}"
+
+extra:
+  recipe-maintainers:
+    - LSTUGA
+    - crashfrog
+    - biocoder
+  identifiers:
+    - doi:10.1128/aem.02600-24
+