Mercurial > repos > jpayne > seqsero2s
diff SeqSero2S/seqsero2s_db/kmer/salmonella.log @ 19:cfc91e1d2c9b draft
planemo upload commit 936a627c4fc706080f07ec678f89e8256a7e7895
| author | jpayne |
|---|---|
| date | Fri, 15 May 2026 17:50:45 +0000 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/SeqSero2S/seqsero2s_db/kmer/salmonella.log Fri May 15 17:50:45 2026 +0000 @@ -0,0 +1,24 @@ +06/26/2023 09:03:06 AM singleSampleTool : GDUTNS--Y1.R1.raw.fastq.gz and GDUTNS--Y1.R2.raw.fastq.gz +06/26/2023 09:03:06 AM singleSampleTool : paired True +06/26/2023 09:03:06 AM singleSampleTool : fastq1 start +06/26/2023 09:03:06 AM singleFileTool :GDUTNS--Y1.R1.raw.fastq.gz +06/26/2023 09:03:06 AM singleFileTool : fastq +06/26/2023 09:03:06 AM fileExplorer :GDUTNS--Y1.R1.raw.fastq.gz +06/26/2023 09:03:54 AM singleSampleTool : fastq1 done +06/26/2023 09:03:54 AM singleSampleTool : fastq2 start +06/26/2023 09:03:54 AM singleFileTool :GDUTNS--Y1.R2.raw.fastq.gz +06/26/2023 09:03:54 AM singleFileTool : fastq +06/26/2023 09:03:54 AM fileExplorer :GDUTNS--Y1.R2.raw.fastq.gz +06/26/2023 09:04:48 AM singleSampleTool : fastq2 done +06/26/2023 09:04:48 AM singleSampleTool : weightedProfile start +06/26/2023 09:04:48 AM weightedProf +06/26/2023 09:04:48 AM singleSampleTool : weightedProfile finished +06/26/2023 09:04:48 AM singleSampleTool : getMaxCount start +06/26/2023 09:04:48 AM getMaxCount +06/26/2023 09:04:48 AM Max Support :GDUTNS--Y : {'purE': {'5': 54640}, 'dnaN': {'8': 75064}, 'thrA': {'15': 80816}, 'sucA': {'11': 61141}, 'hemD': {'11': 72516}, 'aroC': {'8': 77112}, 'hisD': {'11': 51911}} +06/26/2023 09:04:48 AM Second Max Support :GDUTNS--Y : {'purE': {'4': 48207, '456': 48207}, 'dnaN': {'1': 58680, '492': 58680}, 'thrA': {'10': 63003}, 'sucA': {'9': 58437, '46': 58437, '109': 58437, '197': 58437, '413': 58437, '570': 58437, '925': 58437, '1060': 58437}, 'hemD': {'3': 65987}, 'aroC': {'7': 67451}, 'hisD': {'1': 40164, '353': 40164}} +06/26/2023 09:04:48 AM singleSampleTool : getMaxCount end +06/26/2023 09:04:48 AM singleSampleTool : findST start +06/26/2023 09:04:48 AM findST +06/26/2023 09:04:48 AM singleSampleTool : findST end +06/26/2023 09:04:48 AM Command :['/home/shaoting/.conda/envs/seqsero2s/bin/stringMLST.py', '--predict', '-P', 'kmer/salmonella', '-1', 'GDUTNS--Y1.R1.raw.fastq.gz', '-2', 'GDUTNS--Y1.R2.raw.fastq.gz', '-o', 'GDUTNS--Y1_stringMLST.txt']