--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/SeqSero2S/setup.py	Fri May 15 17:50:45 2026 +0000
@@ -0,0 +1,31 @@
+import os, sys
+from distutils.core import setup
+from setuptools import find_packages
+
+def readme():
+    with open('README.md') as f:
+        return f.read()
+
+setup(name='SeqSero2S',
+    #version=open("version.py").readlines()[-1].split()[-1].strip("\"'"),
+    version='1.1.4',
+    description='Salmonella serotyping',
+    long_description=readme(),
+    classifiers=[
+        'Development Status :: 3 - Alpha',
+        'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
+        'Programming Language :: Python :: 3',
+        'Topic :: Text Processing :: Linguistic',
+        ],
+    keywords='Salmonella serotyping bioinformatics WGS',
+    url='https://github.com/denglab/SeqSero2S/',
+    author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng',
+    author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu',
+    license='GPLv2',
+    scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions_SS2S.py","bin/Initial_Conditions_SS2.py","bin/SeqSero2S.py","bin/SeqSero2_update_kmer_database.py"],
+    packages=[""],
+    include_package_data = True,
+    install_requires=['biopython~=1.73'],
+    data_files=[("seqsero2s_db",["seqsero2s_db/mlst.pickle","seqsero2s_db/antigens.pickle","seqsero2s_db/H_and_O_and_specific_genes.fasta","seqsero2s_db/invA_mers_dict","seqsero2s_db/special.pickle"]),("seqsero2s_db/kmer",["seqsero2s_db/kmer/salmonella_35.txt","seqsero2s_db/kmer/salmonella_config.txt","seqsero2s_db/kmer/salmonella_hemD.tfa","seqsero2s_db/kmer/salmonella.log","seqsero2s_db/kmer/salmonella_purE.tfa","seqsero2s_db/kmer/salmonella_thrA.tfa","seqsero2s_db/kmer/salmonella_aroC.tfa","seqsero2s_db/kmer/salmonella_dnaN.tfa","seqsero2s_db/kmer/salmonella_hisD.tfa","seqsero2s_db/kmer/salmonella_profile.txt","seqsero2s_db/kmer/salmonella_sucA.tfa","seqsero2s_db/kmer/salmonella_weight.txt"])],
+    zip_safe=False,
+)