Mercurial > repos > jpayne > seqsero2s

diff seqsero2S.xml @ 2:7a2bd16bd8d9 draft default tip

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planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty
author jpayne
date Wed, 21 Jan 2026 20:40:57 +0000
parents 46d49cf8db7d
children
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line diff
--- a/seqsero2S.xml	Wed Jan 21 19:30:21 2026 +0000
+++ b/seqsero2S.xml	Wed Jan 21 20:40:57 2026 +0000
@@ -36,10 +36,9 @@
         ln -s $forward ${name}_1.fastq;
         ln -s $reverse ${name}_2.fastq;
       #else 
-        #set $name = "$reads.assembly.name.replace(' ', '_')"
-        #set $ga = "$reads.assembly"
-        #set $infile = $name + .fasta 
-        ln -s $ga "$infile";
+        #set $name = $reads.assembly.name.replace(' ', '_')
+        #set $infile = $name + ".fasta" 
+        ln -s $reads.assembly "$infile";
         #set $tval = 4
         #set $mode='k'
       #end if