# HG changeset patch
# User jpayne
# Date 1769028057 0
# Node ID 7a2bd16bd8d98ad3d5c52396c743b7bde32b6ed8
# Parent  46d49cf8db7d0ed235aba6fd93db4aab2dac2420
planemo upload commit 233f498f942f9253a7e6e1656157e59d38549c44-dirty

diff -r 46d49cf8db7d -r 7a2bd16bd8d9 seqsero2S.xml
--- a/seqsero2S.xml	Wed Jan 21 19:30:21 2026 +0000
+++ b/seqsero2S.xml	Wed Jan 21 20:40:57 2026 +0000
@@ -36,10 +36,9 @@
         ln -s $forward ${name}_1.fastq;
         ln -s $reverse ${name}_2.fastq;
       #else 
-        #set $name = "$reads.assembly.name.replace(' ', '_')"
-        #set $ga = "$reads.assembly"
-        #set $infile = $name + .fasta 
-        ln -s $ga "$infile";
+        #set $name = $reads.assembly.name.replace(' ', '_')
+        #set $infile = $name + ".fasta" 
+        ln -s $reads.assembly "$infile";
         #set $tval = 4
         #set $mode='k'
       #end if