Mercurial > repos > jpayne > seqsero_v2

comparison output/forward_25k.fastq.gz.bam @ 1:fae43708974d

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planemo upload
author jpayne
date Fri, 09 Nov 2018 11:30:45 -0500
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0:4ff2aee11e5b 1:fae43708974d
1 @SQ SN:O-1,3,19_not_in_3,10__130 LN:130
2 @SQ SN:O-11_wzy__1080 LN:1080
3 @SQ SN:O-11_wzy-new-from-CP019192__1080 LN:1080
4 @SQ SN:O-13_wzx__1236 LN:1236
5 @SQ SN:O-16_wzy__1233 LN:1233
6 @SQ SN:O-17_wzx__1221 LN:1221
7 @SQ SN:O-18_wzy__1323 LN:1323
8 @SQ SN:O-21_wzy__1089 LN:1089
9 @SQ SN:O-28_wzy__1317 LN:1317
10 @SQ SN:O-28_wzy-another-lineage__1296 LN:1296
11 @SQ SN:O-3,10_not_in_1,3,19__1519 LN:1519
12 @SQ SN:O-3,10_wzx__1539 LN:1539
13 @SQ SN:O-30_wzx__1392 LN:1392
14 @SQ SN:O-35_wzy__1065 LN:1065
15 @SQ SN:O-38_wzy__1083 LN:1083
16 @SQ SN:O-39_wzy__1341 LN:1341
17 @SQ SN:O-40_wzy__1368 LN:1368
18 @SQ SN:O-40_wzy-from-blake-2014K-0489__1368 LN:1368
19 @SQ SN:O-41_wzy__1221 LN:1221
20 @SQ SN:O-42_wzy__1017 LN:1017
21 @SQ SN:O-43_wzy__1344 LN:1344
22 @SQ SN:O-44_wzy__1134 LN:1134
23 @SQ SN:O-44_wzy2__1247 LN:1247
24 @SQ SN:O-45_wzy__1164 LN:1164
25 @SQ SN:O-47_wzy__1095 LN:1095
26 @SQ SN:O-48_wzy__1194 LN:1194
27 @SQ SN:O-48_wzy-from-blake-2014K-0232__1194 LN:1194
28 @SQ SN:O-48_wzy-from-2013K-0909__1194 LN:1194
29 @SQ SN:O-48_unknown-from-serveral-cdc-new-genomes__4477 LN:4477
30 @SQ SN:O-4_wzx__1293 LN:1293
31 @SQ SN:O-50_wzy__978 LN:978
32 @SQ SN:O-51_wzy__1026 LN:1026
33 @SQ SN:O-52_wzy__1065 LN:1065
34 @SQ SN:O-53_wzy__1119 LN:1119
35 @SQ SN:O-54_wbbF__1380 LN:1380
36 @SQ SN:O-55_wzy__1128 LN:1128
37 @SQ SN:O-56_wzy__1179 LN:1179
38 @SQ SN:O-57_wzy__1038 LN:1038
39 @SQ SN:O-58_wzy__1263 LN:1263
40 @SQ SN:O-59_wzy__1236 LN:1236
41 @SQ SN:O-6,14_wzy__1344 LN:1344
42 @SQ SN:O-6,14_wzy-from-Stk2184__1344 LN:1344
43 @SQ SN:O-60_wzy__1050 LN:1050
44 @SQ SN:O-61_wzy__1326 LN:1326
45 @SQ SN:O-62_wzy__1023 LN:1023
46 @SQ SN:O-63_wzy__945 LN:945
47 @SQ SN:O-65_wzy__1125 LN:1125
48 @SQ SN:O-66_wzx__1257 LN:1257
49 @SQ SN:O-67_wzt__741 LN:741
50 @SQ SN:O-7_wzy__1080 LN:1080
51 @SQ SN:O-8_wzy__1200 LN:1200
52 @SQ SN:O-9,46,27_partial_wzy__1019 LN:1019
53 @SQ SN:O-9,46_wbaV__1002 LN:1002
54 @SQ SN:O-9,46_wzy__1191 LN:1191
55 @SQ SN:sdf-I_AF370707__333 LN:333
56 @SQ SN:fliC_z65_Salmonella.bongori_V.66:z65:-_AY353259_other.z65__1506 LN:1506
57 @SQ SN:fliC_z81_Salmonella.bongori_66:z81:-_AY353260_other.z81__1485 LN:1485
58 @SQ SN:fliC_z81_Salmonella.bongori_40:z81:-_AY353261_other.z81__1485 LN:1485
59 @SQ SN:fliC_a_Salmonella.enterica_Paratyphi.A_AY353356_other.a__1488 LN:1488
60 @SQ SN:fliC_a_Salmonella.enterica_Paratyphi.A_AY353357_other.a__1488 LN:1488
61 @SQ SN:fliC_a_Salmonella.enterica_from-cdc-Stk2184_other.a__1488 LN:1488
62 @SQ SN:fliC_b_Salmonella.enterica_Paratyphi.B_AY353358_b,d,j__1488 LN:1488
63 @SQ SN:fliC_b_Salmonella.enterica_from-cdc_Stk1415_b,d,j__1488 LN:1488
64 @SQ SN:fliC_b_Salmonella.enterica_Paratyphi.B_AY353359_b,d,j__1488 LN:1488
65 @SQ SN:fliC_b_Salmonella.enterica_Niederoderwitz_AY353360_b,d,j__1488 LN:1488
66 @SQ SN:fliC_b_Salmonella.enterica_I.6,7:b:z33_AY353361_b,d,j__1488 LN:1488
67 @SQ SN:fliC_b_Salmonella.enterica_IIIb.6,14:b:e,n,x,z15_AY353362_b,d,j__1488 LN:1488
68 @SQ SN:fliC_b_Salmonella.enterica_IIIa.47:b:-_AY353363_b,d,j__1488 LN:1488
69 @SQ SN:fliC_b_Salmonella.enterica_Urbana_No-upload-yet_b,d,j__1488 LN:1488
70 @SQ SN:fliC_c_Salmonella.enterica_Choleraesuis_AY353364_other.c__1506 LN:1506
71 @SQ SN:fliC_c_Salmonella.enterica_Choleraesuis_AY353365_other.c__1506 LN:1506
72 @SQ SN:fliC_c_Salmonella.enterica_IIIb.57:c:z:z60_AY353366_other.c__1506 LN:1506
73 @SQ SN:fliC_c_Salmonella.enterica_Jericho_AY353367_other.c__1506 LN:1506
74 @SQ SN:fliC_c_Salmonella.enterica_Goeteborg_AY353368_other.c__1506 LN:1506
75 @SQ SN:fliC_c_Salmonella.enterica_IIIb.41:c:e,n,x,z15_AY353369_other.c__1506 LN:1506
76 @SQ SN:fliC_c_Salmonella.enterica_IIIb.57:c:e,n,x,z15_AY353370_other.c__1506 LN:1506
77 @SQ SN:fliC_d_Salmonella.enterica_Schwarzengrund_AY353371_b,d,j__1521 LN:1521
78 @SQ SN:fliC_d_Salmonella.enterica_Virginia_AY353372_b,d,j__1521 LN:1521
79 @SQ SN:fliC_d_Salmonella.enterica_Muenchen_AY353373_b,d,j__1521 LN:1521
80 @SQ SN:fliC_d_Salmonella.enterica_Typhi_AY353374_b,d,j__1521 LN:1521
81 @SQ SN:fliC_d_Salmonella.enterica_Typhi_AY353375_b,d,j__1521 LN:1521
82 @SQ SN:fliC_d_Salmonella.enterica_Isangi_AY353376_b,d,j__1521 LN:1521
83 @SQ SN:fliC_e,h_Salmonella.enterica_Saintpaul_AY353377_e__1509 LN:1509
84 @SQ SN:fliC_e,h_Salmonella.enterica_Sandiego.var.d+_AY353378_e__1509 LN:1509
85 @SQ SN:fliC_e,h_Salmonella.enterica_Newport_AY353379_e__1509 LN:1509
86 @SQ SN:fliC_f,g_Salmonella.enterica_Derby_AY353380_g,m__1518 LN:1518
87 @SQ SN:fliC_f,g_Salmonella.enterica_Derby_AY353381_g,m__1518 LN:1518
88 @SQ SN:fliC_f,g,m,t_Salmonella.enterica_II.6,8:f,g,m,t:.e,n,x_AY353382_g,m__1518 LN:1518
89 @SQ SN:fliC_f,g,s_Salmonella.enterica_Agona_AY353383_g,m__1518 LN:1518
90 @SQ SN:fliC_f,g,s_Salmonella.enterica_Agona_AY353384_g,m__1518 LN:1518
91 @SQ SN:fliC_f,g,s_Salmonella.enterica_DTU-genomes_unknown_g,m__1518 LN:1518
92 @SQ SN:fliC_g,m_Salmonella.enterica_Enteritidis_AY353386_g,m__1518 LN:1518
93 @SQ SN:fliC_g,m_Salmonella.enterica_Enteritidis_AY353387_g,m__1518 LN:1518
94 @SQ SN:fliC_g,m_Salmonella.enterica_Enteritidis_AY353388_g,m__1518 LN:1518
95 @SQ SN:fliC_g,m_Salmonella.enterica_Enteritidis_AY353389_g,m__1518 LN:1518
96 @SQ SN:fliC_g,m,s_Salmonella.enterica_Montevideo_AY353391_g,m__1518 LN:1518
97 @SQ SN:fliC_g,m,s_Salmonella.enterica_Montevideo_AY353392_g,m__1518 LN:1518
98 @SQ SN:fliC_g,m,q_Salmonella.enterica_Blegdam_AY353393_g,m__1518 LN:1518
99 @SQ SN:fliC_g,m,s_Salmonella.enterica_Amsterdam.var.O15+_AY353394_g,m__1518 LN:1518
100 @SQ SN:fliC_g,m,s_Salmonella.enterica_Amsterdam_AY353395_g,m__1518 LN:1518
101 @SQ SN:fliC_g,m,s,t_Salmonella.enterica_II.50:.g,m,s,t:1,5_AY353396_g,m__1515 LN:1515
102 @SQ SN:fliC_g,m,s,t_Salmonella.enterica_II.43:g,m,s,t:z42_AY353397_g,m__1515 LN:1515
103 @SQ SN:fliC_g,m_Salmonella.enterica_Enteritidis_AY353398_g,m__1518 LN:1518
104 @SQ SN:fliC_g,p_Salmonella.enterica_Dublin_AY353399_g,m__1518 LN:1518
105 @SQ SN:fliC_g,p_Salmonella.enterica_Dublin_AY353400_g,m__1518 LN:1518
106 @SQ SN:fliC_g,p,s_Salmonella.enterica_Naestved_AY353401_g,m__1518 LN:1518
107 @SQ SN:fliC_g,p,u_Salmonella.enterica_Rostock_AY353402_g,m__1518 LN:1518
108 @SQ SN:fliC_g,q_Salmonella.enterica_Moscow_AY353403_g,m__1518 LN:1518
109 @SQ SN:fliC_g,q_Salmonella.enterica_Moscow_AY353404_g,m__1518 LN:1518
110 @SQ SN:fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518 LN:1518
111 @SQ SN:fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 LN:1518
112 @SQ SN:fliC_g,t_Salmonella.enterica_Agodi_AY353407_g,m__1518 LN:1518
113 @SQ SN:fliC_g,t_Salmonella.enterica_II.16:g,t:1,5_AY353408_g,m__1518 LN:1518
114 @SQ SN:fliC_m,p,t,u_Salmonella.enterica_Haelsingborg_AY353409_g,m__1527 LN:1527
115 @SQ SN:fliC_m,p,t,u_Salmonella.enterica_Haelsingborg_AY353410_g,m__1527 LN:1527
116 @SQ SN:fliC_m,t_Salmonella.enterica_Oranienburg_AY353411_g,m__1527 LN:1527
117 @SQ SN:fliC_m,t_Salmonella.enterica_Oranienburg_AY353412_g,m__1527 LN:1527
118 @SQ SN:fliC_g,z51_Salmonella.enterica_Travis_AY353413_g,m__1515 LN:1515
119 @SQ SN:fliC_g,z51_Salmonella.enterica_IIIa.45:g,z51:-_AY353414_g,m__1515 LN:1515
120 @SQ SN:fliC_g,z62_Salmonella.enterica_II.9,46:g,z62:-_AY353415_g,m__1515 LN:1515
121 @SQ SN:fliC_g,z62_Salmonella.enterica_II.50:g,z62:e,n,x_AY353416_g,m__1515 LN:1515
122 @SQ SN:fliC_i_Salmonella.enterica_IIIb.61:i:z_AY353417_r,i__1488 LN:1488
123 @SQ SN:fliC_i_Salmonella.enterica_Augustenborg_AY353418_r,i__1488 LN:1488
124 @SQ SN:fliC_i_Salmonella.enterica_IIIb.48:i:z_AY353419_r,i__1488 LN:1488
125 @SQ SN:fliC_i_Salmonella.enterica_Typhimurium_AY353420_r,i__1488 LN:1488
126 @SQ SN:fliC_i_Salmonella.enterica_Bandia_AY353421_r,i__1488 LN:1488
127 @SQ SN:fliC_i_Salmonella.enterica_Idikan_AY353422_r,i__1488 LN:1488
128 @SQ SN:fliC_i_Salmonella.enterica_Typhimurium_AY353423_r,i__1488 LN:1488
129 @SQ SN:fliC_i_Salmonella.enterica_Typhimurium_AY353424_r,i__1488 LN:1488
130 @SQ SN:fliC_i_Salmonella.enterica_II.4,12,27:i:z35_AY353425_r,i__1488 LN:1488
131 @SQ SN:fliC_i_Salmonella.enterica_Augustenborg_AY353426_r,i__1488 LN:1488
132 @SQ SN:fliC_i_Salmonella.enterica_Kentucky_AY353427_r,i__1488 LN:1488
133 @SQ SN:fliC_i_Salmonella.enterica_Lindenburg_AY353428_r,i__1488 LN:1488
134 @SQ SN:fliC_i_Salmonella.enterica_Gloucester_AY353429_r,i__1488 LN:1488
135 @SQ SN:fliC_i_Salmonella.enterica_Agama_AY353430_r,i__1488 LN:1488
136 @SQ SN:fliC_i_Salmonella.enterica_IIIb.21:i:e,n,x,z15_AY353431_r,i__1488 LN:1488
137 @SQ SN:fliC_i_Salmonella.enterica_IIIb.57:i:e,n,x,z15_AY353432_r,i__1488 LN:1488
138 @SQ SN:fliC_j_Salmonella.enterica_Typhi.var.j+_AY353433_b,d,j__1260 LN:1260
139 @SQ SN:fliC_j_Salmonella.enterica_Typhi.var.j+_AY353434_b,d,j__1260 LN:1260
140 @SQ SN:fliC_k_Salmonella.enterica_IIIb.42:k:e,n,x,z15_AY353436_k,z__1488 LN:1488
141 @SQ SN:fliC_k_Salmonella.enterica_IIIb.17:k:z_AY353437_k,z__1488 LN:1488
142 @SQ SN:fliC_k_Salmonella.enterica_IIIb.65:k:z_AY353438_k,z__1485 LN:1485
143 @SQ SN:fliC_k_Salmonella.enterica_IIIb.38:k:z35_AY353439_k,z__1485 LN:1485
144 @SQ SN:fliC_k_Salmonella.enterica_IIIb.50:k:z53_AY353440_k,z__1488 LN:1488
145 @SQ SN:fliC_k_Salmonella.enterica_Inverness_AY353441_k,z__1488 LN:1488
146 @SQ SN:fliC_k_Salmonella.enterica_Blockley_AY353442_k,z__1488 LN:1488
147 @SQ SN:fliC_l,v_Salmonella.enterica_Give_AY353443_l,v__1503 LN:1503
148 @SQ SN:fliC_l,v_Salmonella.enterica_Brandenburg_AY353444_l,v__1503 LN:1503
149 @SQ SN:fliC_l,v_Salmonella.enterica_IIIb.38:l,v:z54_AY353445_l,v__1503 LN:1503
150 @SQ SN:fliC_l,w_Salmonella.enterica_Ayton_AY353446_l,v__1503 LN:1503
151 @SQ SN:fliC_l,w_Salmonella.enterica_Glidji_AY353447_l,v__1503 LN:1503
152 @SQ SN:fliC_l,z13_Salmonella.enterica_Kenya_AY353449_l,v__1503 LN:1503
153 @SQ SN:fliC_l,z13_Salmonella.enterica_Westerstede_AY353450_l,v__1503 LN:1503
154 @SQ SN:fliC_l,z13,z28_Salmonella.enterica_Connecticut_AY353452_l,v__1506 LN:1506
155 @SQ SN:fliC_l,z13,z28_Salmonella.enterica_Fallowfield_AY353453_l,v__1506 LN:1506
156 @SQ SN:fliC_l,z13,z28_Salmonella.enterica_from-CDC_2011K-0215_l,v__1506 LN:1506
157 @SQ SN:fliC_l,z28_Salmonella.enterica_Javiana_AY353454_l,v__1506 LN:1506
158 @SQ SN:fliC_l,z28_Salmonella.enterica_Javiana_AY353455_l,v__1506 LN:1506
159 @SQ SN:fliC_r_Salmonella.enterica_Rubislaw_AY353458_r,i__1482 LN:1482
160 @SQ SN:fliC_r_Salmonella.enterica_Heidelberg_AY353459_r,i__1482 LN:1482
161 @SQ SN:fliC_r_Salmonella.enterica_IIIb.35:r:z61_AY353460_r,i__1482 LN:1482
162 @SQ SN:fliC_r_Salmonella.enterica_IIIb.58:r:z53:z47_AY353461_r,i__1482 LN:1482
163 @SQ SN:fliC_r_Salmonella.enterica_IIIb.38:r:e,n,x,z15_AY353462_r,i__1482 LN:1482
164 @SQ SN:fliC_r,i_Salmonella.enterica_Bovismorbificans_AY353463_r,i__1476 LN:1476
165 @SQ SN:fliC_r,i_Salmonella.enterica_Hidalgo_AY353464_r,i__1476 LN:1476
166 @SQ SN:fliC_y_Salmonella.enterica_Giza_AY353465_other.y__1521 LN:1521
167 @SQ SN:fliC_y_Salmonella.enterica_Freetown_AY353466_other.y__1521 LN:1521
168 @SQ SN:fliC_z_Salmonella.enterica_Poona_AY353467_k,z__1500 LN:1500
169 @SQ SN:fliC_z_Salmonella.enterica_Indiana_AY353468_k,z__1500 LN:1500
170 @SQ SN:fliC_z_Salmonella.enterica_II.16:z:z42_AY353469_k,z__1500 LN:1500
171 @SQ SN:fliC_z_Salmonella.enterica_II.40:z:z42_AY353470_k,z__1500 LN:1500
172 @SQ SN:fliC_z10_Salmonella.enterica_Istanbul_AY353471_other.z10__1500 LN:1500
173 @SQ SN:fliC_z10_Salmonella.enterica_Harrisonburg_AY353472_other.z10__1500 LN:1500
174 @SQ SN:fliC_z10_Salmonella.enterica_IIIb.28:z10:z57_AY353473_other.z10__1500 LN:1500
175 @SQ SN:fliC_z29_Salmonella.enterica_Tennessee_AY353474_other.z29__1518 LN:1518
176 @SQ SN:fliC_z29_Salmonella.enterica_Cubana_AY353475_other.z29__1518 LN:1518
177 @SQ SN:fliC_z29_Salmonella.enterica_Mundubbera_AY353476_other.z29__1518 LN:1518
178 @SQ SN:fliC_z29_Salmonella.enterica_Mundubbera_AY353477_other.z29__1518 LN:1518
179 @SQ SN:fliC_z29_Salmonella.enterica_IIIa.41:z29:-_AY353478_other.z29__1518 LN:1518
180 @SQ SN:fliC_z29_Salmonella.enterica_IIIa.62:z29:-_AY353479_other.z29__1518 LN:1518
181 @SQ SN:fliC_z35_Salmonella.enterica_Tema_AY353480_other.z35__1488 LN:1488
182 @SQ SN:fliC_z35_Salmonella.enterica_Tienba_AY353481_other.z35__1488 LN:1488
183 @SQ SN:fliC_z36_Salmonella.enterica_Potosi_AY353482_z36,z38__1266 LN:1266
184 @SQ SN:fliC_z36_Salmonella.enterica_Weslaco_AY353483_z36,z38__1266 LN:1266
185 @SQ SN:fliC_z36_Salmonella.enterica_IIIa.43:z36:-_AY353484_z36,z38__1266 LN:1266
186 @SQ SN:fliC_z36,z38_Salmonella.enterica_IV.1,53:z36,z38:-_AY353485_z36,z38__1266 LN:1266
187 @SQ SN:fliC_z36,z38_Salmonella.enterica_IV.43:z36,z38:-_AY353486_z36,z38__1266 LN:1266
188 @SQ SN:fliC_z38_Salmonella.enterica_Fresno_AY353487_z36,z38__1266 LN:1266
189 @SQ SN:fliC_z38_Salmonella.enterica_Lille_AY353488_z36,z38__1266 LN:1266
190 @SQ SN:fliC_z39_Salmonella.enterica_Grancanaria_AY353489_other.z39__1500 LN:1500
191 @SQ SN:fliC_z39_Salmonella.enterica_Grancanaria_AY353490_other.z39__1500 LN:1500
192 @SQ SN:fliC_z39_Salmonella.enterica_IIIb.6,7:z39:1,2_AY353491_other.z39__1500 LN:1500
193 @SQ SN:fliC_z4,z23_Salmonella.enterica_IV.1,40:z4,z23:-_AY353492_z4,z23__1269 LN:1269
194 @SQ SN:fliC_z4,z23_Salmonella.enterica_Ajiobo_AY353493_z4,z23__1269 LN:1269
195 @SQ SN:fliC_z4,z23_Salmonella.enterica_Ekotedo_AY353494_z4,z23__1269 LN:1269
196 @SQ SN:fliC_z4,z23_Salmonella.enterica_IIIa.43:z4,z23:-_AY353495_z4,z23__1269 LN:1269
197 @SQ SN:fliC_z4,z23_Salmonella.enterica_IIIa.40:z4,z23:-_AY353496_z4,z23__1242 LN:1242
198 @SQ SN:fliC_z4,z23_Salmonella.enterica_IIIa.44:z4,z23:-_AY353497_z4,z23__1275 LN:1275
199 @SQ SN:fliC_z4,z23_Salmonella.enterica_Gera_AY353498_z4,z23__1269 LN:1269
200 @SQ SN:fliC_z4,z23_Salmonella.enterica_IV.38:z4,z23:-_AY353499_z4,z23__1269 LN:1269
201 @SQ SN:fliC_z4,z23,z32_Salmonella.enterica_IIIa.13,23:z4,z23,z32:-_AY353500_z4,z23__1266 LN:1266
202 @SQ SN:fliC_z4,z23,z32_Salmonella.enterica_IIIa.56:z4,z23,z32:-_AY353501_z4,z23__1266 LN:1266
203 @SQ SN:fliC_z4,z23,z32_Salmonella.enterica_IIIa.44:z4,z23,z32:-_AY353502_z4,z23__1266 LN:1266
204 @SQ SN:fliC_z4,z24_Salmonella.enterica_Romanby_AY353503_z4,z23__1281 LN:1281
205 @SQ SN:fliC_z4,z24_Salmonella.enterica_II.1,9,12,46,27:z4,z24:1,5_AY353504_z4,z23__1281 LN:1281
206 @SQ SN:fliC_z4,z24_Salmonella.enterica_IIIa.53:z4,z24:-_AY353505_z4,z23__1281 LN:1281
207 @SQ SN:fliC_z4,z32_Salmonella.enterica_IV.44:z4z32:-_AY353506_z4,z23__1269 LN:1269
208 @SQ SN:fliC_z4,z32_Salmonella.enterica_Tallahassee_AY353507_z4,z23__1269 LN:1269
209 @SQ SN:fliC_z4,z32_Salmonella.enterica_IIIa.63:z4,z32:-_AY353508_z4,z23__1269 LN:1269
210 @SQ SN:fliC_z4,z32_Salmonella.enterica_IIIa.41:z4,z32:-_AY353509_z4,z23__1266 LN:1266
211 @SQ SN:fliC_z41_Salmonella.enterica_Ottawa_AY353510_k,z__1491 LN:1491
212 @SQ SN:fliC_z41_Salmonella.enterica_Maska_AY353511_k,z__1491 LN:1491
213 @SQ SN:fliC_z44_Salmonella.enterica_Quinhon_AY353513_k,z__1491 LN:1491
214 @SQ SN:fliC_z47_Salmonella.enterica_IIIb.38:z47:z53_AY353514_l,v__1500 LN:1500
215 @SQ SN:fliC_z52_Salmonella.enterica_IIIb.50:z52:z35_AY353516_l,v__1506 LN:1506
216 @SQ SN:fliC_z52_Salmonella.enterica_IIIb.65:z52:z35_AY353517_l,v__1506 LN:1506
217 @SQ SN:fliC_z6_Salmonella.enterica_II.48:e,n,x,z15:z6_AY353519_k,z__1503 LN:1503
218 @SQ SN:fliC_z69_Salmonella.enterica_Pietersburg_AY353520_k,z__1503 LN:1503
219 @SQ SN:fliC_f,g,t_Salmonella.enterica_Berta_AY353532_g,m__1527 LN:1527
220 @SQ SN:fliC_f,g,t_Salmonella.enterica_Berta_AY353533_g,m__1527 LN:1527
221 @SQ SN:fliC_f,g,t_Salmonella.enterica_II.17:f,g,t:e,n,x,z15_AY353534_g,m__1518 LN:1518
222 @SQ SN:fliC_f,g,t_Salmonella.enterica_II.1,40:f,g,t:z42_AY353535_g,m__1518 LN:1518
223 @SQ SN:fliC_g,m,t_Salmonella.enterica_II.28:g,m,t:e,n,x_AY353536_g,m__1515 LN:1515
224 @SQ SN:fliC_g,m,t_Salmonella.enterica_II.6,8:g,m,t:1,7_AY353537_g,m__1515 LN:1515
225 @SQ SN:fliC_k_Salmonella.enterica_IIIb.50:k:z_AY353538_k,z__1488 LN:1488
226 @SQ SN:fliC_k_Salmonella.enterica_IIIb.61:k:1,5_AY353539_k,z__1488 LN:1488
227 @SQ SN:fliC_k_Salmonella.enterica_IIIb.38:k:z53_AY353540_k,z__1485 LN:1485
228 @SQ SN:fliC_k_Salmonella.enterica_IIIb.16:k:e,n,x,z15_AY353541_k,z__1485 LN:1485
229 @SQ SN:fliC_k_Salmonella.enterica_IIIb.42:k:z35_AY353542_k,z__1485 LN:1485
230 @SQ SN:fliC_z4,z32_Salmonella.enterica_IIIa.18:z4,z32:-_AY353543_z4,z23__1269 LN:1269
231 @SQ SN:fliC_z4,z23_Salmonella.enterica_I.8,20:z4,z23:-_AY353544_z4,z23__1269 LN:1269
232 @SQ SN:fliC_z4,z23_Salmonella.enterica_IIIa.62:z4,z23:-_AY353545_z4,z23__1269 LN:1269
233 @SQ SN:fliC_z4,z23_Salmonella.enterica_IIIa.18:z4,z23:-_AY353546_z4,z23__1269 LN:1269
234 @SQ SN:fliC_z4,z23_Salmonella.enterica_IIIa.41:z4,z23:-_AY353547_z4,z23__1269 LN:1269
235 @SQ SN:fliC_z4,z32_Salmonella.enterica_IV.48:z4,z32:-_AY353548_z4,z23__1269 LN:1269
236 @SQ SN:fliC_z4,z23_Salmonella.enterica_I.47:z4,z23:-_AY353549_z4,z23__1269 LN:1269
237 @SQ SN:fliC_z4,z32_16_z4,z32_--str_ANHR01000045_z4,z23__1257 LN:1257
238 @SQ SN:fliC_i_4,[5],12_i_-str_ABAO01000026_r,i__1476 LN:1476
239 @SQ SN:fliC_g,z51_50_g,z51_-str_AOXJ01000042_g,m__1503 LN:1503
240 @SQ SN:fliC_z4,z24_Albanystr_AOZW01000055_z4,z23__1269 LN:1269
241 @SQ SN:fliC_e,h_Anatumstr_AOZZ01000009_e__1497 LN:1497
242 @SQ SN:fliC_e,h_Anatumstr_APAA01000233_e__1497 LN:1497
243 @SQ SN:fliC_y_Bareillystr_ALPN01000010_other.y__1509 LN:1509
244 @SQ SN:fliC_y_Bareillystr_AOZP01000027_other.y__1508 LN:1508
245 @SQ SN:fliC_e,h_Braenderupstr_AOZM01000034_e__1497 LN:1497
246 @SQ SN:fliC_z4,z23_Cerrostr_AYVH01000420_z4,z23__1257 LN:1257
247 @SQ SN:fliC_z4,z23_Cerrostr_AOZJ01000077_z4,z23__1257 LN:1257
248 @SQ SN:fliC_z4,z23_Cerrostr_AYVG01000027_z4,z23__1257 LN:1257
249 @SQ SN:fliC_z4,z23_Cerrostr_AYVF01000022_z4,z23__1257 LN:1257
250 @SQ SN:fliC_z4,z23_Cerrostr_AYVE01000024_z4,z23__1257 LN:1257
251 @SQ SN:fliC_z4,z23_Cerrostr_AYVD01000023_z4,z23__1257 LN:1257
252 @SQ SN:fliC_z4,z23_Cerrostr_AYVB01000023_z4,z23__1257 LN:1257
253 @SQ SN:fliC_z4,z23_Cerrostr_AYVA01000024_z4,z23__1257 LN:1257
254 @SQ SN:fliC_z4,z23_Cerrostr_AYUZ01000022_z4,z23__1257 LN:1257
255 @SQ SN:fliC_z4,z23_Cerrostr_AYUY01000025_z4,z23__1257 LN:1257
256 @SQ SN:fliC_z4,z23_Cerrostr_AYUX01000023_z4,z23__1257 LN:1257
257 @SQ SN:fliC_z4,z23_Cerrostr_AYUW01000021_z4,z23__1257 LN:1257
258 @SQ SN:fliC_z4,z23_Cerrostr_AYUV01000029_z4,z23__1257 LN:1257
259 @SQ SN:fliC_z4,z23_Cerrostr_AYUU01000023_z4,z23__1257 LN:1257
260 @SQ SN:fliC_z4,z23_Cerrostr_AYUT01000021_z4,z23__1257 LN:1257
261 @SQ SN:fliC_z4,z23_Cerrostr_AYUS01000023_z4,z23__1257 LN:1257
262 @SQ SN:fliC_z4,z23_Cerrostr_AYUR01000024_z4,z23__1257 LN:1257
263 @SQ SN:fliC_e,h_Chesterstr_AOZI01000027_e__1497 LN:1497
264 @SQ SN:fliC_f,g_Derbystr_AOZH01000145_g,m__1506 LN:1506
265 @SQ SN:fliC_g,p_Dublinstr_ATFR01000073_g,m__1506 LN:1506
266 @SQ SN:fliC_g,p_Dublinstr_AHUK01000006_g,m__1506 LN:1506
267 @SQ SN:fliC_g,p_Dublinstr_AEUK01000013_g,m__1506 LN:1506
268 @SQ SN:fliC_g,p_Dublinstr_AHUJ01000052_g,m__1506 LN:1506
269 @SQ SN:fliC_g,p_Dublinstr_APMR01000022_g,m__1506 LN:1506
270 @SQ SN:fliC_g,m_Enteritidisstr_AKFY01000033_g,m__1506 LN:1506
271 @SQ SN:fliC_g,m_Enteritidisstr_AKFZ01000001_g,m__1506 LN:1506
272 @SQ SN:fliC_g,m_Enteritidisstr_AKGA01000008_g,m__1506 LN:1506
273 @SQ SN:fliC_g,m_Enteritidisstr_ATFS01000055_g,m__1506 LN:1506
274 @SQ SN:fliC_g,m_Enteritidisstr_AHUQ01000034_g,m__1506 LN:1506
275 @SQ SN:fliC_g,m_Enteritidisstr_ALGV01000126_g,m__1506 LN:1506
276 @SQ SN:fliC_g,m_Enteritidisstr_ALHB01000088_g,m__1506 LN:1506
277 @SQ SN:fliC_g,m_Enteritidisstr_AHUP01000090_g,m__1506 LN:1506
278 @SQ SN:fliC_g,m_Enteritidisstr_AHUM01000184_g,m__1506 LN:1506
279 @SQ SN:fliC_g,m_Enteritidisstr_ATFT01000006_g,m__1506 LN:1506
280 @SQ SN:fliC_g,m_Enteritidisstr_ATFU01000045_g,m__1506 LN:1506
281 @SQ SN:fliC_g,m_Enteritidisstr_ATFV01000087_g,m__1506 LN:1506
282 @SQ SN:fliC_g,m_Enteritidisstr_AJVD01000007_g,m__1506 LN:1506
283 @SQ SN:fliC_g,m_Enteritidisstr_ATFW01000015_g,m__1506 LN:1506
284 @SQ SN:fliC_g,m_Enteritidisstr_ATFX01000074_g,m__1506 LN:1506
285 @SQ SN:fliC_g,m_Enteritidisstr_ATFY01000066_g,m__1506 LN:1506
286 @SQ SN:fliC_g,m_Enteritidisstr_ATFZ01000055_g,m__1506 LN:1506
287 @SQ SN:fliC_g,m_Enteritidisstr_ATGA01000071_g,m__1506 LN:1506
288 @SQ SN:fliC_g,m_Enteritidisstr_AKFX01000001_g,m__1506 LN:1506
289 @SQ SN:fliC_g,m_Enteritidisstr_AKFW01000001_g,m__1506 LN:1506
290 @SQ SN:fliC_g,m_Enteritidisstr_ALEX01000012_g,m__1506 LN:1506
291 @SQ SN:fliC_g,m_Enteritidisstr_ALHD01000038_g,m__1507 LN:1507
292 @SQ SN:fliC_g,m_Enteritidisstr_ALFD01000137_g,m__1506 LN:1506
293 @SQ SN:fliC_g,m_Enteritidisstr_ALHX01000067_g,m__1506 LN:1506
294 @SQ SN:fliC_g,m_Enteritidisstr_AHUO01000138_g,m__1506 LN:1506
295 @SQ SN:fliC_g,m_Enteritidisstr_ALEN01000029_g,m__1506 LN:1506
296 @SQ SN:fliC_g,m_Enteritidisstr_ALFB01000043_g,m__1506 LN:1506
297 @SQ SN:fliC_g,m_Enteritidisstr_ALID01000034_g,m__1506 LN:1506
298 @SQ SN:fliC_g,m_Enteritidisstr_ALHE01000053_g,m__1506 LN:1506
299 @SQ SN:fliC_g,m_Enteritidisstr_ALHF01000001_g,m__1506 LN:1506
300 @SQ SN:fliC_g,m_Enteritidisstr_ALHU01000052_g,m__1506 LN:1506
301 @SQ SN:fliC_g,m_Enteritidisstr_ALHG01000036_g,m__1506 LN:1506
302 @SQ SN:fliC_g,m_Enteritidisstr_ALHT01000004_g,m__1506 LN:1506
303 @SQ SN:fliC_g,m_Enteritidisstr_ALGK01000045_g,m__1506 LN:1506
304 @SQ SN:fliC_g,m_Enteritidisstr_ALFC01000013_g,m__1506 LN:1506
305 @SQ SN:fliC_g,m_Enteritidisstr_ALEO01000036_g,m__1506 LN:1506
306 @SQ SN:fliC_g,m_Enteritidisstr_ALEP01000030_g,m__1506 LN:1506
307 @SQ SN:fliC_g,m_Enteritidisstr_ALGO01000035_g,m__1506 LN:1506
308 @SQ SN:fliC_g,m_Enteritidisstr_ALEM01000039_g,m__1506 LN:1506
309 @SQ SN:fliC_g,m_Enteritidisstr_ALGM01000100_g,m__1506 LN:1506
310 @SQ SN:fliC_g,m_Enteritidisstr_ALGN01000056_g,m__1506 LN:1506
311 @SQ SN:fliC_g,m_Enteritidisstr_ALGP01000035_g,m__1506 LN:1506
312 @SQ SN:fliC_g,m_Enteritidisstr_ALIC01000030_g,m__1506 LN:1506
313 @SQ SN:fliC_g,m_Enteritidisstr_ALEI01000031_g,m__1506 LN:1506
314 @SQ SN:fliC_g,m_Enteritidisstr_ALGQ01000046_g,m__1506 LN:1506
315 @SQ SN:fliC_g,m_Enteritidisstr_ALEQ01000015_g,m__1506 LN:1506
316 @SQ SN:fliC_g,m_Enteritidisstr_ALER01000047_g,m__1506 LN:1506
317 @SQ SN:fliC_g,m_Enteritidisstr_ALGL01000008_g,m__1506 LN:1506
318 @SQ SN:fliC_g,m_Enteritidisstr_ALHA01000049_g,m__1506 LN:1506
319 @SQ SN:fliC_g,m_Enteritidisstr_ALEJ01000019_g,m__1506 LN:1506
320 @SQ SN:fliC_g,m_Enteritidisstr_ALES01000018_g,m__1506 LN:1506
321 @SQ SN:fliC_g,m_Enteritidisstr_ALET01000040_g,m__1506 LN:1506
322 @SQ SN:fliC_g,m_Enteritidisstr_ALEK01000025_g,m__1506 LN:1506
323 @SQ SN:fliC_g,m_Enteritidisstr_ALHH01000044_g,m__1506 LN:1506
324 @SQ SN:fliC_g,m_Enteritidisstr_ALHS01000129_g,m__1506 LN:1506
325 @SQ SN:fliC_g,m_Enteritidisstr_ALHI01000004_g,m__1506 LN:1506
326 @SQ SN:fliC_g,m_Enteritidisstr_ALHJ01000044_g,m__1506 LN:1506
327 @SQ SN:fliC_g,m_Enteritidisstr_ALHK01000130_g,m__1506 LN:1506
328 @SQ SN:fliC_g,m_Enteritidisstr_ALHL01000012_g,m__1506 LN:1506
329 @SQ SN:fliC_g,m_Enteritidisstr_ALHM01000048_g,m__1506 LN:1506
330 @SQ SN:fliC_g,m_Enteritidisstr_ALHV01000088_g,m__1506 LN:1506
331 @SQ SN:fliC_g,m_Enteritidisstr_ALHN01000008_g,m__1506 LN:1506
332 @SQ SN:fliC_g,m_Enteritidisstr_ALFA01000041_g,m__1506 LN:1506
333 @SQ SN:fliC_g,m_Enteritidisstr_ALHO01000019_g,m__1506 LN:1506
334 @SQ SN:fliC_g,m_Enteritidisstr_ALHP01000034_g,m__1506 LN:1506
335 @SQ SN:fliC_g,m_Enteritidisstr_ALHQ01000183_g,m__1506 LN:1506
336 @SQ SN:fliC_g,m_Enteritidisstr_ALEZ01000038_g,m__1506 LN:1506
337 @SQ SN:fliC_g,m_Enteritidisstr_ALHR01000025_g,m__1506 LN:1506
338 @SQ SN:fliC_g,m_Enteritidisstr_ALHW01000046_g,m__1506 LN:1506
339 @SQ SN:fliC_g,m_Enteritidisstr_ALEL01000037_g,m__1506 LN:1506
340 @SQ SN:fliC_g,m_Enteritidisstr_ALEU01000024_g,m__1506 LN:1506
341 @SQ SN:fliC_g,m_Enteritidisstr_ALEV01000014_g,m__1506 LN:1506
342 @SQ SN:fliC_g,m_Enteritidisstr_ALEW01000021_g,m__1506 LN:1506
343 @SQ SN:fliC_g,m_Enteritidisstr_ALIB01000065_g,m__1506 LN:1506
344 @SQ SN:fliC_g,m_Enteritidisstr_ALEY01000031_g,m__1506 LN:1506
345 @SQ SN:fliC_g,m_Enteritidisstr_ALFS01000031_g,m__1506 LN:1506
346 @SQ SN:fliC_g,m_Enteritidisstr_ALFT01000039_g,m__1506 LN:1506
347 @SQ SN:fliC_g,m_Enteritidisstr_ALGD01000016_g,m__1506 LN:1506
348 @SQ SN:fliC_g,m_Enteritidisstr_ALFW01000025_g,m__1506 LN:1506
349 @SQ SN:fliC_g,m_Enteritidisstr_ALFQ01000034_g,m__1506 LN:1506
350 @SQ SN:fliC_g,m_Enteritidisstr_ALFP01000018_g,m__1506 LN:1506
351 @SQ SN:fliC_g,m_Enteritidisstr_ALFM01000038_g,m__1506 LN:1506
352 @SQ SN:fliC_g,m_Enteritidisstr_ALFX01000034_g,m__1506 LN:1506
353 @SQ SN:fliC_g,m_Enteritidisstr_ALFY01000023_g,m__1506 LN:1506
354 @SQ SN:fliC_g,m_Enteritidisstr_ALGE01000023_g,m__1506 LN:1506
355 @SQ SN:fliC_g,m_Enteritidisstr_ALFU01000016_g,m__1506 LN:1506
356 @SQ SN:fliC_g,m_Enteritidisstr_ALFL01000019_g,m__1506 LN:1506
357 @SQ SN:fliC_g,m_Enteritidisstr_ALFO01000021_g,m__1506 LN:1506
358 @SQ SN:fliC_g,m_Enteritidisstr_ALFZ01000046_g,m__1506 LN:1506
359 @SQ SN:fliC_g,m_Enteritidisstr_ALGA01000022_g,m__1506 LN:1506
360 @SQ SN:fliC_g,m_Enteritidisstr_ALFJ01000022_g,m__1506 LN:1506
361 @SQ SN:fliC_g,m_Enteritidisstr_ALGF01000038_g,m__1506 LN:1506
362 @SQ SN:fliC_g,m_Enteritidisstr_ALFK01000019_g,m__1506 LN:1506
363 @SQ SN:fliC_g,m_Enteritidisstr_ALFI01000018_g,m__1506 LN:1506
364 @SQ SN:fliC_g,m_Enteritidisstr_ALGG01000021_g,m__1506 LN:1506
365 @SQ SN:fliC_g,m_Enteritidisstr_ALFR01000018_g,m__1506 LN:1506
366 @SQ SN:fliC_g,m_Enteritidisstr_ALGH01000031_g,m__1506 LN:1506
367 @SQ SN:fliC_g,m_Enteritidisstr_ALFV01000024_g,m__1506 LN:1506
368 @SQ SN:fliC_g,m_Enteritidisstr_ALGI01000021_g,m__1506 LN:1506
369 @SQ SN:fliC_g,m_Enteritidisstr_ALGJ01000044_g,m__1506 LN:1506
370 @SQ SN:fliC_g,m_Enteritidisstr_ALGB01000061_g,m__1506 LN:1506
371 @SQ SN:fliC_g,m_Enteritidisstr_ALFN01000056_g,m__1506 LN:1506
372 @SQ SN:fliC_g,m_Enteritidisstr_ALGC01000031_g,m__1506 LN:1506
373 @SQ SN:fliC_g,m_Enteritidisstr_ALFG01000038_g,m__1506 LN:1506
374 @SQ SN:fliC_g,m_Enteritidisstr_ALFH01000028_g,m__1506 LN:1506
375 @SQ SN:fliC_g,m_Enteritidisstr_ALFF01000001_g,m__1506 LN:1506
376 @SQ SN:fliC_g,m_Enteritidisstr_ALHC01000046_g,m__1506 LN:1506
377 @SQ SN:fliC_g,m_Enteritidisstr_ALGT01000028_g,m__1506 LN:1506
378 @SQ SN:fliC_g,m_Enteritidisstr_ALGZ01000018_g,m__1506 LN:1506
379 @SQ SN:fliC_g,m_Enteritidisstr_ALGU01000066_g,m__1506 LN:1506
380 @SQ SN:fliC_g,m_Enteritidisstr_ALGW01000034_g,m__1506 LN:1506
381 @SQ SN:fliC_g,m_Enteritidisstr_ALGS01000033_g,m__1506 LN:1506
382 @SQ SN:fliC_g,m_Enteritidisstr_CAGR02000072_g,m__1506 LN:1506
383 @SQ SN:fliC_g,m_Enteritidisstr_AHUR01000042_g,m__1506 LN:1506
384 @SQ SN:fliC_g,m_Enteritidisstr_ALHY01000185_g,m__1506 LN:1506
385 @SQ SN:fliC_g,m_Enteritidisstr_AHUN01000143_g,m__1506 LN:1506
386 @SQ SN:fliC_g,m_Enteritidisstr_ALGR01000023_g,m__1506 LN:1506
387 @SQ SN:fliC_g,m_Enteritidisstr_ALFE01000865_g,m__1506 LN:1506
388 @SQ SN:fliC_g,m_Enteritidisstr_AHUL01000064_g,m__1506 LN:1506
389 @SQ SN:fliC_g,m_Enteritidisstr_ALGX01000033_g,m__1506 LN:1506
390 @SQ SN:fliC_g,m_Enteritidisstr_ALGY01000052_g,m__1506 LN:1506
391 @SQ SN:fliC_z10_Hadarstr_ALPP01000007_other.z10__1488 LN:1488
392 @SQ SN:fliC_z10_Hadarstr_ARYR01000061_other.z10__1488 LN:1488
393 @SQ SN:fliC_z10_Hadarstr_AOZE01000026_other.z10__1488 LN:1488
394 @SQ SN:fliC_z10_Hadarstr_ABFG01000001_other.z10__1488 LN:1488
395 @SQ SN:fliC_y_Hartfordstr_ALPO01000014_other.y__1509 LN:1509
396 @SQ SN:fliC_f,g_Havanastr_APAH01000011_g,m__1506 LN:1506
397 @SQ SN:fliC_r_Heidelbergstr_AJGW01000023_r,i__1470 LN:1470
398 @SQ SN:fliC_r_Heidelbergstr_AMMX01000026_r,i__1470 LN:1470
399 @SQ SN:fliC_r_Heidelbergstr_AMBU01000009_r,i__1470 LN:1470
400 @SQ SN:fliC_r_Heidelbergstr_AMBV01000021_r,i__1470 LN:1470
401 @SQ SN:fliC_r_Heidelbergstr_AMBW01000024_r,i__1470 LN:1470
402 @SQ SN:fliC_r_Heidelbergstr_AMBX01000033_r,i__1470 LN:1470
403 @SQ SN:fliC_r_Heidelbergstr_AMLT01000023_r,i__1470 LN:1470
404 @SQ SN:fliC_r_Heidelbergstr_ABEL01000019_r,i__1470 LN:1470
405 @SQ SN:fliC_z_Indianastr_AOZC01000051_k,z__1488 LN:1488
406 @SQ SN:fliC_r_Infantisstr_ASRF01000003_r,i__1470 LN:1470
407 @SQ SN:fliC_r_Infantisstr_ATHK01000035_r,i__1470 LN:1470
408 @SQ SN:fliC_r_Infantisstr_AFYI01000002_r,i__1470 LN:1470
409 @SQ SN:fliC_k_Invernessstr_AOZD01000019_k,z__1476 LN:1476
410 @SQ SN:fliC_i_Kentuckystr_AYDR01000065_r,i__1476 LN:1476
411 @SQ SN:fliC_i_Kentuckystr_AUQF01000095_r,i__1476 LN:1476
412 @SQ SN:fliC_i_Kentuckystr_AUQJ01000023_r,i__1476 LN:1476
413 @SQ SN:fliC_i_Kentuckystr_AUQH01000025_r,i__1476 LN:1476
414 @SQ SN:fliC_i_Kentuckystr_AUQG01000079_r,i__1476 LN:1476
415 @SQ SN:fliC_i_Kentuckystr_AHUU01000095_r,i__1476 LN:1476
416 @SQ SN:fliC_i_Kentuckystr_AOYZ01000062_r,i__1476 LN:1476
417 @SQ SN:fliC_i_Kentuckystr_ABEI01000026_r,i__1476 LN:1476
418 @SQ SN:fliC_i_Kentuckystr_ABAK02000001_r,i__1476 LN:1476
419 @SQ SN:fliC_i_Kentuckystr_AUQI01000013_r,i__1476 LN:1476
420 @SQ SN:fliC_l,v_Litchfieldstr_APAN01000015_l,v__1503 LN:1503
421 @SQ SN:fliC_d_Manhattanstr_CBKW010000019_b,d,j__1509 LN:1509
422 @SQ SN:fliC_z10_Mbandakastr_AMRS01000012_other.z10__1488 LN:1488
423 @SQ SN:fliC_z10_Mbandakastr_AOYR01000081_other.z10__1488 LN:1488
424 @SQ SN:fliC_e,h_Meleagridisstr_AOYN01000134_e__1497 LN:1497
425 @SQ SN:fliC_g,m,s_Montevideostr_AESV01000018_g,m__1506 LN:1506
426 @SQ SN:fliC_g,m,s_Montevideostr_AETO01000011_g,m__1506 LN:1506
427 @SQ SN:fliC_g,m,s_Montevideostr_AETP01000010_g,m__1506 LN:1506
428 @SQ SN:fliC_g,m,s_Montevideostr_AESW01000008_g,m__1506 LN:1506
429 @SQ SN:fliC_g,m,s_Montevideostr_AETQ01000008_g,m__1506 LN:1506
430 @SQ SN:fliC_g,m,s_Montevideostr_AESH01000005_g,m__1506 LN:1506
431 @SQ SN:fliC_g,m,s_Montevideostr_AETC01000024_g,m__1506 LN:1506
432 @SQ SN:fliC_g,m,p,s_Montevideostr_AETD01000005_g,m__1506 LN:1506
433 @SQ SN:fliC_g,m,p,s_Montevideostr_AETB01000006_g,m__1506 LN:1506
434 @SQ SN:fliC_g,m,s_Montevideostr_AESX01000056_g,m__1506 LN:1506
435 @SQ SN:fliC_g,m,s_Montevideostr_AESY01000046_g,m__1506 LN:1506
436 @SQ SN:fliC_g,m,p,s_Montevideostr_AETE01000015_g,m__1506 LN:1506
437 @SQ SN:fliC_g,m,s_Montevideostr_AESI01000041_g,m__1506 LN:1506
438 @SQ SN:fliC_g,m,s_Montevideostr_AESJ01000008_g,m__1506 LN:1506
439 @SQ SN:fliC_g,m,s_Montevideostr_AESK01000044_g,m__1506 LN:1506
440 @SQ SN:fliC_g,m,s_Montevideostr_AETI02000041_g,m__1506 LN:1506
441 @SQ SN:fliC_g,m,s_Montevideostr_AESL01000019_g,m__1506 LN:1506
442 @SQ SN:fliC_g,m,s_Montevideostr_AESM01000002_g,m__1506 LN:1506
443 @SQ SN:fliC_g,m,s_Montevideostr_AETJ01000074_g,m__1506 LN:1506
444 @SQ SN:fliC_g,m,s_Montevideostr_AETF01000024_g,m__1506 LN:1506
445 @SQ SN:fliC_g,m,s_Montevideostr_AETH01000030_g,m__1506 LN:1506
446 @SQ SN:fliC_g,m,s_Montevideostr_AHHR01000020_g,m__1506 LN:1506
447 @SQ SN:fliC_g,m,s_Montevideostr_AESZ01000027_g,m__1506 LN:1506
448 @SQ SN:fliC_g,m,s_Montevideostr_AOYQ01000011_g,m__1506 LN:1506
449 @SQ SN:fliC_g,m,s_Montevideostr_AESQ01000027_g,m__1506 LN:1506
450 @SQ SN:fliC_g,m,s_Montevideostr_AHHS01000127_g,m__1506 LN:1506
451 @SQ SN:fliC_g,m,s_Montevideostr_AHHT01000008_g,m__1506 LN:1506
452 @SQ SN:fliC_g,m,s_Montevideostr_AHHU01000002_g,m__1506 LN:1506
453 @SQ SN:fliC_g,m,s_Montevideostr_AHHV01000005_g,m__1506 LN:1506
454 @SQ SN:fliC_g,m,s_Montevideostr_AHHW01000042_g,m__1506 LN:1506
455 @SQ SN:fliC_g,m,s_Montevideostr_AETR01000004_g,m__1506 LN:1506
456 @SQ SN:fliC_g,m,s_Montevideostr_AETS01000018_g,m__1506 LN:1506
457 @SQ SN:fliC_g,m,s_Montevideostr_AETT01000121_g,m__1506 LN:1506
458 @SQ SN:fliC_g,m,s_Montevideostr_AETU01000047_g,m__1506 LN:1506
459 @SQ SN:fliC_g,m,s_Montevideostr_AETV01000017_g,m__1506 LN:1506
460 @SQ SN:fliC_g,m,s_Montevideostr_AHIK01000035_g,m__1506 LN:1506
461 @SQ SN:fliC_g,m,s_Montevideostr_AETW01000039_g,m__1506 LN:1506
462 @SQ SN:fliC_g,m,s_Montevideostr_AEST01000016_g,m__1506 LN:1506
463 @SQ SN:fliC_g,m,s_Montevideostr_AETK01000014_g,m__1506 LN:1506
464 @SQ SN:fliC_g,m,s_Montevideostr_AETL01000157_g,m__1506 LN:1506
465 @SQ SN:fliC_g,m,s_Montevideostr_AETM01000185_g,m__1506 LN:1506
466 @SQ SN:fliC_g,m,s_Montevideostr_AETN01000014_g,m__1506 LN:1506
467 @SQ SN:fliC_g,m,s_Montevideostr_AETA01000024_g,m__1506 LN:1506
468 @SQ SN:fliC_g,m,s_Montevideostr_AESO01000031_g,m__1506 LN:1506
469 @SQ SN:fliC_g,m,s_Montevideostr_AESP01000070_g,m__1506 LN:1506
470 @SQ SN:fliC_g,m,s_Montevideostr_AESU01000013_g,m__1506 LN:1506
471 @SQ SN:fliC_g,m,s_Montevideostr_AESR01000008_g,m__1506 LN:1506
472 @SQ SN:fliC_d_Muenchenstr_ARYX01000110_b,d,j__1488 LN:1488
473 @SQ SN:fliC_d_Muenchenstr_ARYW01000085_b,d,j__1496 LN:1496
474 @SQ SN:fliC_d_Muenchenstr_AOXN01000006_b,d,j__1509 LN:1509
475 @SQ SN:fliC_d_Muenchenstr_AOYV01000177_b,d,j__1509 LN:1509
476 @SQ SN:fliC_d_Muenchenstr_AOYT01000015_b,d,j__1509 LN:1509
477 @SQ SN:fliC_z4,z23_Namurstr_AWGG01000011_z4,z23__1257 LN:1257
478 @SQ SN:fliC_b_ParatyphiBstr_AOXH01000168_b,d,j__1476 LN:1476
479 @SQ SN:fliC_y_Pomonastr_AHIA01000046_other.y__1509 LN:1509
480 @SQ SN:fliC_f,g_Rissenstr_AHUI01000019_g,m__1506 LN:1506
481 @SQ SN:fliC_r_Rubislawstr_AOYA01000064_r,i__1470 LN:1470
482 @SQ SN:fliC_e,h_Saintpaulstr_AYDS01000023_e__1497 LN:1497
483 @SQ SN:fliC_e,h_Saintpaulstr_AOXY01000026_e__1497 LN:1497
484 @SQ SN:fliC_e,h_Saintpaulstr_ABAM02000001_e__1497 LN:1497
485 @SQ SN:fliC_e,h_Saintpaulstr_AOXF01000060_e__1497 LN:1497
486 @SQ SN:fliC_d_Schwarzengrundstr_ABEJ01000027_b,d,j__1509 LN:1509
487 @SQ SN:fliC_g,s,t_Senftenbergstr_AOYU01000052_g,m__1506 LN:1506
488 @SQ SN:fliC_g,s,t_Senftenbergstr_AYDO01000098_g,m__1506 LN:1506
489 @SQ SN:fliC_g,s,t_Senftenbergstr_AYDP01000091_g,m__1506 LN:1506
490 @SQ SN:fliC_g,s,t_Senftenbergstr_AOYP01000022_g,m__1506 LN:1506
491 @SQ SN:fliC_g,s,t_Senftenbergstr_AOXW01000066_g,m__1506 LN:1506
492 @SQ SN:fliC_g,s,t_Senftenbergstr_AYEJ01000044_g,m__1506 LN:1506
493 @SQ SN:fliC_g,s,t_Senftenbergstr_CAGQ01000036_g,m__1506 LN:1506
494 @SQ SN:fliC_z35_Sloterdijkstr_AOXT01000110_other.z35__1476 LN:1476
495 @SQ SN:fliC_d_Stanleystr_ARYV01000046_b,d,j__1509 LN:1509
496 @SQ SN:fliC_d_Stanleystr_AOXV01000153_b,d,j__1509 LN:1509
497 @SQ SN:fliC_z4,z32_Tallahasseestr_AOXS01000084_z4,z23__1257 LN:1257
498 @SQ SN:fliC_k_Thompsonstr_AMSN01000007_k,z__1476 LN:1476
499 @SQ SN:fliC_k_Thompsonstr_AOXP01000022_k,z__1476 LN:1476
500 @SQ SN:fliC_i_Typhimuriumstr_AUQT01000018_r,i__1476 LN:1476
501 @SQ SN:fliC_i_Typhimuriumstr_AUQU01000015_r,i__1476 LN:1476
502 @SQ SN:fliC_i_Typhimuriumstr_AUQV01000045_r,i__1476 LN:1476
503 @SQ SN:fliC_i_Typhimuriumstr_AOXC01000029_r,i__1476 LN:1476
504 @SQ SN:fliC_i_Typhimuriumstr_AHUV01000013_r,i__1476 LN:1476
505 @SQ SN:fliC_i_Typhimuriumstr_AUQM01000007_r,i__1476 LN:1476
506 @SQ SN:fliC_i_Typhimuriumstr_AUQO01000013_r,i__1476 LN:1476
507 @SQ SN:fliC_i_Typhimuriumstr_AUQN01000009_r,i__1476 LN:1476
508 @SQ SN:fliC_i_Typhimuriumstr_AUQL01000008_r,i__1476 LN:1476
509 @SQ SN:fliC_i_Typhimuriumstr_AHVA01000002_r,i__1476 LN:1476
510 @SQ SN:fliC_i_Typhimuriumstr_AHUZ01000001_r,i__1476 LN:1476
511 @SQ SN:fliC_i_Typhimuriumstr_AOXO01000030_r,i__1476 LN:1476
512 @SQ SN:fliC_i_Typhimuriumstr_AJTU01000002_r,i__1476 LN:1476
513 @SQ SN:fliC_i_Typhimuriumstr_AOXD01000106_r,i__1476 LN:1476
514 @SQ SN:fliC_i_Typhimuriumstr_AMEE02000072_r,i__1476 LN:1476
515 @SQ SN:fliC_i_Typhimuriumstr_ATWR01000101_r,i__1476 LN:1476
516 @SQ SN:fliC_i_Typhimuriumstr_AMDZ02000002_r,i__1476 LN:1476
517 @SQ SN:fliC_i_Typhimuriumstr_AMEA02000017_r,i__1476 LN:1476
518 @SQ SN:fliC_i_Typhimuriumstr_AERV01000014_r,i__1476 LN:1476
519 @SQ SN:fliC_d_Typhistr_AJGK01000049_b,d,j__1509 LN:1509
520 @SQ SN:fliC_d_Typhistr_AKZO01000023_b,d,j__1509 LN:1509
521 @SQ SN:fliC_d_Typhistr_AKIC01000186_b,d,j__1509 LN:1509
522 @SQ SN:fliC_d_Typhistr_CAAR01000280_b,d,j__1509 LN:1509
523 @SQ SN:fliC_d_Typhistr_CAAT01000104_b,d,j__1509 LN:1509
524 @SQ SN:fliC_d_Typhistr_CAAZ01000150_b,d,j__1509 LN:1509
525 @SQ SN:fliC_d_Typhistr_CAAW01000401_b,d,j__1509 LN:1509
526 @SQ SN:fliC_d_Typhistr_CAAX01000878_b,d,j__1509 LN:1509
527 @SQ SN:fliC_d_Typhistr_AJXA01000113_b,d,j__1509 LN:1509
528 @SQ SN:fliC_d_Typhistr_JABZ01000017_b,d,j__1509 LN:1509
529 @SQ SN:fliC_d_Typhistr_AJTD01000160_b,d,j__1509 LN:1509
530 @SQ SN:fliC_d_Typhistr_AJTE01000190_b,d,j__1509 LN:1509
531 @SQ SN:fliC_r_Virchowstr_ABFH02000002_r,i__1470 LN:1470
532 @SQ SN:fliC_r_Weltevredenstr_ABFF01000030_r,i__1470 LN:1470
533 @SQ SN:fljB_z35_Salmonella.enterica_IIIb.38:k:z35_AY353262_other.z35__1488 LN:1488
534 @SQ SN:fljB_1,2_Salmonella.enterica_Typhimurium_AY353264_1__1521 LN:1521
535 @SQ SN:fljB_1,2_Salmonella.enterica_Heidelberg_AY353265_1__1521 LN:1521
536 @SQ SN:fljB_1,2_Salmonella.enterica_Derby_AY353266_1__1521 LN:1521
537 @SQ SN:fljB_1,2_Salmonella.enterica_Stanley_AY353267_1__1521 LN:1521
538 @SQ SN:fljB_1,2_Salmonella.enterica_Typhimurium_AY353268_1__1521 LN:1521
539 @SQ SN:fljB_1,2_Salmonella.enterica_Muenchen_AY353269_1__1521 LN:1521
540 @SQ SN:fljB_1,2_Salmonella.enterica_Litchfield_AY353271_1__1521 LN:1521
541 @SQ SN:fljB_1,2_Salmonella.enterica_1,4,5,12:i:1,2,7_AY353272_1__1521 LN:1521
542 @SQ SN:fljB_1,5,7_Salmonella.enterica_IIIb.6,7:l,v:1,5,7_AY353273_1__1521 LN:1521
543 @SQ SN:fljB_1,5,7_Salmonella.enterica_IIIb.48:l,w:1,5,7:z50_AY353274_1__1521 LN:1521
544 @SQ SN:fljB_1,5_from-Ibadan-micro-assembly_SRR1753831_1__1521 LN:1521
545 @SQ SN:fljB_1,5_from-Infantis-micro-assembly_SRR1106258_1__1521 LN:1521
546 @SQ SN:fljB_1,5_from-cdc_Stk2184_1__1521 LN:1521
547 @SQ SN:fljB_1,2_from-Brazzaville_SRR2058145_1__1521 LN:1521
548 @SQ SN:fljB_1,2,7_Salmonella.enterica_Kambole_AY353275_1__1521 LN:1521
549 @SQ SN:fljB_1,2,7_Salmonella.enterica_Eingedi_AY353276_1__1521 LN:1521
550 @SQ SN:fljB_1,2,7_Salmonella.enterica_Kambole_AY353277_1__1521 LN:1521
551 @SQ SN:fljB_1,5_Salmonella.enterica_IIIb.61:k:1,5_AY353278_1__1521 LN:1521
552 @SQ SN:fljB_1,5_Salmonella.enterica_61:l,v:1,5_AY353279_1__1521 LN:1521
553 @SQ SN:fljB_1,5_Salmonella.enterica_Rough:r:1,5_AY353280_1__1521 LN:1521
554 @SQ SN:fljB_1,5_Salmonella.enterica_Rough:r:1,5_AY353281_1__1521 LN:1521
555 @SQ SN:fljB_1,5_Salmonella.enterica_Infantis_AY353282_1__1521 LN:1521
556 @SQ SN:fljB_1,5_Salmonella.enterica_Bovismorbificans_AY353283_1__1521 LN:1521
557 @SQ SN:fljB_1,5_Salmonella.enterica_I.43:e,h:1,5_AY353284_1__1521 LN:1521
558 @SQ SN:fljB_1,5_Salmonella.enterica_Thompson_AY353285_1__1521 LN:1521
559 @SQ SN:fljB_1,5_Salmonella.enterica_Thompson_AY353286_1__1521 LN:1521
560 @SQ SN:fljB_1,5_Salmonella.enterica_Thompson_AY353287_1__1521 LN:1521
561 @SQ SN:fljB_1,5_Muensterstr_AOYX01000059_1__1511 LN:1511
562 @SQ SN:fljB_1,5_Muensterstr_AOYW01000030_1__1511 LN:1511
563 @SQ SN:fljB_1,5_Choleraesuis_CP007639_1__1521 LN:1521
564 @SQ SN:fljB_1,5_Javiana_SAMN02902435_1__1511 LN:1511
565 @SQ SN:fljB_1,5_Muenster_DTU-unknown(tail&head LN:1521
566 @SQ SN:fljB_1,5,7_Salmonella.enterica_Hisingen_AY353289_1__1521 LN:1521
567 @SQ SN:fljB_1,5,7_Salmonella.enterica_IIIb.48:l,v:1,5,7_AY353290_1__1521 LN:1521
568 @SQ SN:fljB_1,5,7_Salmonella.enterica_IIIb.47:r:1,5,7_AY353291_1__1521 LN:1521
569 @SQ SN:fljB_1,6_Salmonella.enterica_Agama_AY353294_1__1521 LN:1521
570 @SQ SN:fljB_1,6_Salmonella.enterica_Poona_AY353295_1__1521 LN:1521
571 @SQ SN:fljB_1,7_Salmonella.enterica_Bredeney_AY353296_1__1521 LN:1521
572 @SQ SN:fljB_1,7_Salmonella.enterica_Nola_AY353298_1__1521 LN:1521
573 @SQ SN:fljB_1,7_Salmonella.enterica_Pomona_AY353299_1__1521 LN:1521
574 @SQ SN:fljB_1,7_Salmonella.enterica_from-cdc_Stk1415_1__1521 LN:1521
575 @SQ SN:fljB_1,7_Salmonella.enterica_Give_AY353300_1__1521 LN:1521
576 @SQ SN:fljB_e,n,z15_Salmonella.enterica_Sandiego.var.d+_AY353303_e__1506 LN:1506
577 @SQ SN:fljB_e,n,x_Salmonella.enterica_Singapore_AY353305_e__1506 LN:1506
578 @SQ SN:fljB_e,n,x,z15_Salmonella.enterica_16:z10:e,n,x,z15_AY353306_e__1506 LN:1506
579 @SQ SN:fljB_e,n,x_Salmonella.enterica_Chester_AY353307_e__1506 LN:1506
580 @SQ SN:fljB_e,n,x_Salmonella.enterica_Bonn_AY353308_e__1506 LN:1506
581 @SQ SN:fljB_e,n,x_Salmonella.enterica_from-CDC_Stk0811_e__1506 LN:1506
582 @SQ SN:fljB_e,n,x,z15_Salmonella.enterica_IIIb.42:k:e,n,x,z15_AY353309_e__1506 LN:1506
583 @SQ SN:fljB_e,n,x,z15_Salmonella.enterica_Verity_AY353311_e__1506 LN:1506
584 @SQ SN:fljB_e,n,x,z15_Salmonella.enterica_IIIb.57:i:e,n,x,z15_AY353312_e__1506 LN:1506
585 @SQ SN:fljB_e,n,x,z15_Salmonella.enterica_IIIb.47:i:e,n,x,z15_AY353313_e__1506 LN:1506
586 @SQ SN:fljB_e,n,z15_from-Chailey_SRR1049702_e__1506 LN:1506
587 @SQ SN:fljB_e,n,x_Salmonella.enterica_II.56:e,n,x:1,7_AY353314_e__1506 LN:1506
588 @SQ SN:fljB_e,n,x_Salmonella.enterica_Tiergarten_AY353315_e__1506 LN:1506
589 @SQ SN:fljB_e,n,x_Salmonella.enterica_II.9,46:e,n,x:1,5,7_AY353316_e__1506 LN:1506
590 @SQ SN:fljB_e,n,x_Salmonella.enterica_Bessi_AY353317_e__1506 LN:1506
591 @SQ SN:fljB_e,n,x_Salmonella.enterica_Tambacounda_AY353318_e__1506 LN:1506
592 @SQ SN:fljB_e,n,x_Salmonella.enterica_Kokomlemle_AY353319_e__1506 LN:1506
593 @SQ SN:fljB_e,n,x_Salmonella.enterica_II.9,12:lw:enx_AY353320_e__1506 LN:1506
594 @SQ SN:fljB_e,n,x_Salmonella.enterica_Chester_AY353321_e__1506 LN:1506
595 @SQ SN:fljB_e,n,x_Salmonella.enterica_Gatuni_AY353322_e__1506 LN:1506
596 @SQ SN:fljB_e,n,z15_Salmonella.enterica_Brandenburg_AY353323_e__1506 LN:1506
597 @SQ SN:fljB_e,n,z15_Salmonella.enterica_Braenderup_AY353324_e__1506 LN:1506
598 @SQ SN:fljB_e,n,z15_Salmonella.enterica_Uno_AY353325_e__1506 LN:1506
599 @SQ SN:fljB_e,n,z15_Salmonella.enterica_Sanktgeorg_AY353326_e__1506 LN:1506
600 @SQ SN:fljB_k_Salmonella.enterica_II.52:c:k_AY353328_k,z__1488 LN:1488
601 @SQ SN:fljB_k_Salmonella.enterica_II.13,23:k:z41_AY353329_k,z__1488 LN:1488
602 @SQ SN:fljB_k_Salmonella.enterica_IIIb.52:c:k_AY353330_k,z__1488 LN:1488
603 @SQ SN:fljB_l,w_Salmonella.enterica_Ohio_AY353331_l,v__1503 LN:1503
604 @SQ SN:fljB_l,w_Salmonella.enterica_Gloucester_AY353332_l,v__1503 LN:1503
605 @SQ SN:fljB_l,z13,z28_Salmonella.enterica_Poano_AY353333_l,v__1506 LN:1506
606 @SQ SN:fljB_l,z13,z28_Salmonella.enterica_Lutetia_AY353334_l,v__1506 LN:1506
607 @SQ SN:fliC_l,z13,z28_Salmonella.enterica_Hiduddify_DTU-unknown_l,v__1506 LN:1506
608 @SQ SN:fljB_z_Salmonella.enterica_IIIb.61:i:z_AY353335_k,z__1500 LN:1500
609 @SQ SN:fljB_z_Salmonella.enterica_IIIb.48:i:z_AY353336_k,z__1500 LN:1500
610 @SQ SN:fljB_z_Salmonella.enterica_IIIb.50:k:z_AY353337_k,z__1500 LN:1500
611 @SQ SN:fljB_z_Salmonella.enterica_IIIb.53:z:1,5,7_AY353338_k,z__1500 LN:1500
612 @SQ SN:fljB_z_Salmonella.enterica_IIIb.48:z:1,5,7_AY353339_k,z__1500 LN:1500
613 @SQ SN:fljB_z35_Salmonella.enterica_Tamilnadu_AY353340_other.z35__1488 LN:1488
614 @SQ SN:fljB_z35_Salmonella.enterica_Kolar_AY353341_other.z35__1488 LN:1488
615 @SQ SN:fljB_z35_Salmonella.enterica_III.b.65:z52:z35_AY353342_other.z35__1488 LN:1488
616 @SQ SN:fljB_z35_Salmonella.enterica_IIIb.35:z52:z35_AY353343_other.z35__1488 LN:1488
617 @SQ SN:fljB_z35_Salmonella.enterica_IIIb.38:z35:z52_AY353344_other.z35__1488 LN:1488
618 @SQ SN:fljB_z39_Salmonella.enterica_II.43:d:z39_AY353345_other.z39__1500 LN:1500
619 @SQ SN:fljB_z39_Salmonella.enterica_II.4,12:g,m,t:z39_AY353346_other.z39__1500 LN:1500
620 @SQ SN:fljB_z39_Salmonella.enterica_II.52:z39:1,5,7_AY353347_other.z39__1500 LN:1500
621 @SQ SN:fljB_z39_Salmonella.enterica_II.51:l,z28:z39_AY353348_other.z39__1500 LN:1500
622 @SQ SN:fljB_z39_Salmonella.enterica_II.6,7:z39:1,5,7_AY353349_other.z39__1500 LN:1500
623 @SQ SN:fljB_z39_Salmonella.enterica_IIIb.40:z39:1,6_AY353350_other.z39__1500 LN:1500
624 @SQ SN:fljB_z6_Salmonella.enterica_Bere_AY353352_k,z__1503 LN:1503
625 @SQ SN:fljB_z6_Salmonella.enterica_Weltevreden_AY353353_k,z__1503 LN:1503
626 @SQ SN:fljB_1,6_Salmonella.enterica_Poona_AY353355_1__1521 LN:1521
627 @SQ SN:fljB_1,6_Anatumstr_AOZZ01000116_1__1511 LN:1511
628 @SQ SN:fljB_1,6_Anatumstr_APAA01000114_1__1511 LN:1511
629 @SQ SN:fljB_1,5_Bareillystr_AOZP01000315_1__1511 LN:1511
630 @SQ SN:fljB_e,n,z15_Braenderupstr_AOZM01000055_e__1496 LN:1496
631 @SQ SN:fljB_e,n,x_Chesterstr_AOZI01000020_e__1496 LN:1496
632 @SQ SN:fljB_1,7_Gaminarastr_AOZF01000073_1__1511 LN:1511
633 @SQ SN:fljB_1,7_Givestr_AOZG01000012_1__1511 LN:1511
634 @SQ SN:fljB_e,n,x_Hadarstr_ARYR01000012_e__1496 LN:1496
635 @SQ SN:fljB_e,n,x_Hadarstr_AOZE01000017_e__1496 LN:1496
636 @SQ SN:fljB_e,n,x_Hadarstr_ABFG01000005_e__1496 LN:1496
637 @SQ SN:fljB_1,2_Heidelbergstr_AMMX01000009_1__1511 LN:1511
638 @SQ SN:fljB_1,2_Heidelbergstr_AMBU01000011_1__1511 LN:1511
639 @SQ SN:fljB_1,2_Heidelbergstr_AMBV01000028_1__1511 LN:1511
640 @SQ SN:fljB_1,2_Heidelbergstr_AMBW01000031_1__1511 LN:1511
641 @SQ SN:fljB_1,2_Heidelbergstr_AMBX01000038_1__1511 LN:1511
642 @SQ SN:fljB_1,2_Heidelbergstr_AMLT01000029_1__1511 LN:1511
643 @SQ SN:fljB_1,2_Heidelbergstr_ABEL01000015_1__1511 LN:1511
644 @SQ SN:fljB_1,7_Indianastr_AOZC01000015_1__1511 LN:1511
645 @SQ SN:fljB_1,5_Infantisstr_ASRF01000034_1__1511 LN:1511
646 @SQ SN:fljB_1,5_Infantisstr_ATHK01000001_1__1511 LN:1511
647 @SQ SN:fljB_1,5_Infantisstr_AFYI01000002_1__1511 LN:1511
648 @SQ SN:fljB_1,6_Invernessstr_AOZD01000029_1__1511 LN:1511
649 @SQ SN:fljB_z6_Kentuckystr_AYDR01000034_k,z__1493 LN:1493
650 @SQ SN:fljB_z6_Kentuckystr_AUQF01000002_k,z__1493 LN:1493
651 @SQ SN:fljB_z6_Kentuckystr_AUQJ01000001_k,z__1493 LN:1493
652 @SQ SN:fljB_z6_Kentuckystr_AUQH01000001_k,z__1493 LN:1493
653 @SQ SN:fljB_z6_Kentuckystr_AHUU01000123_k,z__1493 LN:1493
654 @SQ SN:fljB_z6_Kentuckystr_AOYZ01000091_k,z__1493 LN:1493
655 @SQ SN:fljB_z6_Kentuckystr_AOYY01000105_k,z__1493 LN:1493
656 @SQ SN:fljB_z6_Kentuckystr_ABAK02000001_k,z__1493 LN:1493
657 @SQ SN:fljB_z6_Kentuckystr_AUQI01000001_k,z__1493 LN:1493
658 @SQ SN:fljB_1,2_Litchfieldstr_APAN01000023_1__1511 LN:1511
659 @SQ SN:fljB_1,5_Manhattanstr_CBKW010000016_1__1511 LN:1511
660 @SQ SN:fljB_e,n,z15_Mbandakastr_AMRS01000032_e__1496 LN:1496
661 @SQ SN:fljB_e,n,x_Minnesotastr_AOYO01000082_e__1496 LN:1496
662 @SQ SN:fljB_1,2_Muenchenstr_ARYX01000100_1__1511 LN:1511
663 @SQ SN:fljB_1,2_Muenchenstr_ARYW01000037_1__1511 LN:1511
664 @SQ SN:fljB_1,2_Muenchenstr_AOXN01000021_1__1511 LN:1511
665 @SQ SN:fljB_1,2_Muenchenstr_AOYT01000042_1__1511 LN:1511
666 @SQ SN:fljB_1,2_Newportstr_AUQQ01000002_1__1511 LN:1511
667 @SQ SN:fljB_1,2_Newportstr_AUQP01000016_1__1511 LN:1511
668 @SQ SN:fljB_1,2_Newportstr_AYDM01000071_1__1511 LN:1511
669 @SQ SN:fljB_1,2_Newportstr_AHUB01000037_1__1511 LN:1511
670 @SQ SN:fljB_1,2_Newportstr_AHTP01000026_1__1511 LN:1511
671 @SQ SN:fljB_1,2_Newportstr_AHTQ01000031_1__1511 LN:1511
672 @SQ SN:fljB_1,2_Newportstr_AHUE01000047_1__1511 LN:1511
673 @SQ SN:fljB_1,2_Newportstr_AHUF01000051_1__1511 LN:1511
674 @SQ SN:fljB_1,2_Newportstr_AHTR01000013_1__1511 LN:1511
675 @SQ SN:fljB_1,2_Newportstr_AHUD01000057_1__1511 LN:1511
676 @SQ SN:fljB_1,2_Newportstr_AHTV01000035_1__1511 LN:1511
677 @SQ SN:fljB_1,2_Newportstr_AHTL01000056_1__1511 LN:1511
678 @SQ SN:fljB_1,2_Newportstr_AHTT01000014_1__1511 LN:1511
679 @SQ SN:fljB_1,2_Newportstr_AHUA01000025_1__1511 LN:1511
680 @SQ SN:fljB_1,2_Newportstr_AHTW01000052_1__1511 LN:1511
681 @SQ SN:fljB_1,2_Newportstr_AHTU01000008_1__1511 LN:1511
682 @SQ SN:fljB_1,2_Newportstr_AHTM01000016_1__1511 LN:1511
683 @SQ SN:fljB_1,2_Newportstr_AHTJ01000021_1__1511 LN:1511
684 @SQ SN:fljB_1,2_Newportstr_AHTN01000022_1__1511 LN:1511
685 @SQ SN:fljB_1,2_Newportstr_AHTK01000007_1__1511 LN:1511
686 @SQ SN:fljB_1,2_Newportstr_AHUC01000029_1__1511 LN:1511
687 @SQ SN:fljB_1,2_Newportstr_AHTZ01000054_1__1511 LN:1511
688 @SQ SN:fljB_1,2_Newportstr_AHTY01000074_1__1511 LN:1511
689 @SQ SN:fljB_1,2_Newportstr_AOGH01000019_1__1511 LN:1511
690 @SQ SN:fljB_1,2_Newportstr_AJMO01000050_1__1511 LN:1511
691 @SQ SN:fljB_1,2_Newportstr_AYEB01000020_1__1511 LN:1511
692 @SQ SN:fljB_1,2_Newportstr_AYEA01000014_1__1511 LN:1511
693 @SQ SN:fljB_1,2_Newportstr_AYDZ01000021_1__1510 LN:1510
694 @SQ SN:fljB_1,2_Newportstr_AYDY01000005_1__1511 LN:1511
695 @SQ SN:fljB_1,2_Newportstr_ABEW01000002_1__1511 LN:1511
696 @SQ SN:fljB_1,2_Newportstr_AYEI01000024_1__1511 LN:1511
697 @SQ SN:fljB_1,2_Newportstr_AYEH01000009_1__1511 LN:1511
698 @SQ SN:fljB_1,2_Newportstr_AYEG01000094_1__1511 LN:1511
699 @SQ SN:fljB_1,2_Newportstr_AYED01000019_1__1511 LN:1511
700 @SQ SN:fljB_1,2_Newportstr_AYEC01000044_1__1511 LN:1511
701 @SQ SN:fljB_1,5_Panamastr_AOYJ01000008_1__1511 LN:1511
702 @SQ SN:fljB_1,7_Pomonastr_AHIA01000072_1__1511 LN:1511
703 @SQ SN:fljB_e,n,x_Rubislawstr_AOYA01000090_e__1496 LN:1496
704 @SQ SN:fljB_1,2_Saintpaulstr_AYDS01000021_1__1511 LN:1511
705 @SQ SN:fljB_1,2_Saintpaulstr_ABAM02000001_1__1511 LN:1511
706 @SQ SN:fljB_1,2_Saintpaulstr_AOXF01000050_1__1511 LN:1511
707 @SQ SN:fljB_z6_Sloterdijkstr_AOXT01000012_k,z__1493 LN:1493
708 @SQ SN:fljB_1,2_Stanleystr_ARYV01000056_1__1511 LN:1511
709 @SQ SN:fljB_1,2_Stanleystr_AOXV01000001_1__1511 LN:1511
710 @SQ SN:fljB_1,2_Typhimuriumstr_AUQT01000077_1__1511 LN:1511
711 @SQ SN:fljB_1,2_Typhimuriumstr_AUQU01000007_1__1511 LN:1511
712 @SQ SN:fljB_1,2_Typhimuriumstr_AUQV01000001_1__1511 LN:1511
713 @SQ SN:fljB_1,2_Typhimuriumstr_AOXC01000008_1__1511 LN:1511
714 @SQ SN:fljB_1,2_Typhimuriumstr_AHUV01000080_1__1511 LN:1511
715 @SQ SN:fljB_1,2_Typhimuriumstr_AUQM01000018_1__1511 LN:1511
716 @SQ SN:fljB_1,2_Typhimuriumstr_AUQO01000019_1__1511 LN:1511
717 @SQ SN:fljB_1,2_Typhimuriumstr_AUQN01000019_1__1511 LN:1511
718 @SQ SN:fljB_1,2_Typhimuriumstr_AUQL01000023_1__1511 LN:1511
719 @SQ SN:fljB_1,2_Typhimuriumstr_AHVA01000007_1__1511 LN:1511
720 @SQ SN:fljB_1,2_Typhimuriumstr_AHUZ01000007_1__1511 LN:1511
721 @SQ SN:fljB_1,2_Typhimuriumstr_AOXO01000107_1__1511 LN:1511
722 @SQ SN:fljB_1,2_Typhimuriumstr_AJTU01000003_1__1511 LN:1511
723 @SQ SN:fljB_1,2_Typhimuriumstr_AOXD01000102_1__1511 LN:1511
724 @SQ SN:fljB_1,2_Typhimuriumstr_AMEE02000100_1__1511 LN:1511
725 @SQ SN:fljB_1,2_Typhimuriumstr_ATWR01000017_1__1511 LN:1511
726 @SQ SN:fljB_1,2_Typhimuriumstr_AMDZ02000041_1__1511 LN:1511
727 @SQ SN:fljB_1,2_Typhimuriumstr_AMEA02000051_1__1511 LN:1511
728 @SQ SN:fljB_1,2_Typhimuriumstr_AERV01000016_1__1511 LN:1511
729 @SQ SN:fljB_z6_Weltevredenstr_ABFF01000037_k,z__1493 LN:1493
730 @SQ SN:fljB_z53_IIIb.60:(k):z53_HM142067_other.z53__1497 LN:1497
731 @SQ SN:oafA__1830 LN:1830
732 @SQ SN:oafA-O-4_full__332 LN:332
733 @SQ SN:oafA-O-4_5-__325 LN:325
734 @SQ SN:sdf_I_AF370707__333 LN:333
735 @SQ SN:tyr-O-2__608 LN:31
736 @SQ SN:tyr-O-9__609 LN:32
737 @SQ SN:gntR-family-regulatory-protein_dt-negative__291 LN:291
738 @SQ SN:gntR-family-regulatory-protein_dt-positive__291 LN:291
739 @SQ SN:O:23-gene1__1029 LN:1029
740 @SQ SN:O:22-gene1__1071 LN:1071
741 @SQ SN:O:23-gene2__1146 LN:1146
742 @SQ SN:O:22-gene2__1023 LN:1023
743 @SQ SN:O:23-gene3__454 LN:454
744 @SQ SN:O:22-gene3__411 LN:411
745 @SQ SN:fljB_1,5_Bareilly_CFSAN000189__1511 LN:1511
746 @SQ SN:fljB_1,5_Idikan_SRR1272896__1511 LN:1511
747 @SQ SN:fliC_f,g_Salmonella.enterica_Adelaide_SRR1068324__1518 LN:1518
748 @SQ SN:fliC_d_Salmonella.enterica_Livingstone_SRR1299429__1521 LN:1521
749 @SQ SN:fliC_l,v_from-Nchanga_SRR1153349__1503 LN:1503
750 @SQ SN:fliC_d_from-II-48:d:z6_SRR1168371__1521 LN:1521
751 @SQ SN:fljB_z6_from-II-48:d:z6_SRR1168371__1503 LN:1503
752 @SQ SN:O-41_wzy-from-Waycross-SRR1233896__1221 LN:1221
753 @SQ SN:O-9,46_wbaV-from-II-9,12:z29:1,5-SRR1346254__1002 LN:1002
754 @PG ID:bwa PN:bwa VN:0.7.17-r1188 CL:bwa mem -k 17 -t 4 H_and_O_and_specific_genes.fasta forward_25k.fastq.gz reverse_25k.fastq.gz
755 M01659:202:000000000-BLMFJ:1:1101:20726:2390 81 O:23-gene1__1029 517 60 251M = 335 -433 TTTTCCGCAGTAAGTCTTCGTTATTTTAATCCTACTGGTGCTCATAAATCAGGTATGATTGGGGAAGATCCTAATGGAATACCAAATAACCTCATTCCATATATATCACAAGTTGCCACTGGAAAACTTAAATATTTAAATGTATATGGTGGTGATTATGACACAATTGATGGCACTGGCATGCGAGATTATATTCATGTAGATGATTTAGCTGAAGGACATGTCAAGACATTAGAATACATGTTATCAAC EGGGCFHHHHHHHHGGFGGGHHHHHHGHHFHHHHHGHHHHHGHHHHHHHHHHHHHGHHGHHHHHHHHHHHHHHHHHHHHHHGIHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGHHHHHGHHHHHHHHHHHHGHHHHHHHGHHHHGGGGHHHGIGHIHHIHHHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGGGGGFFFFFFFCCBCA NM:i:1 MD:Z:194A56 MC:Z:251M AS:i:246 XS:i:0
756 M01659:202:000000000-BLMFJ:1:1101:20726:2390 161 O:23-gene1__1029 335 60 251M = 517 433 CTGCAATGCAAAGTGCAAATGTAAATAATTTGATTTTTAGTTCGTCTGCTACCGTATATGGTTGTTCTTCGATTGTTCCAAATAAAGAGAACGATACAATTGGGGGGACTACAAATCCCTATGGAACATCAAAATATTTTAGTGAGATTATTCTGCAGGATTTTTGTAAGTCTAATGAGTTATTTTCCGCAGTAAGTCTTCGTTATTTTAATCCTACTGGTGCTCATAAATCAGGTATGATTGGGGAAGAT BBBBBFFFFFFFGGGGGGGGGGHHGHHHHHGHGHHHHGGHHGHGGGHGHHHGEEFEHHHHHGFGEHHHHGFHHHGHHHGGHHHHGFGHFGHHFAHGGHFHHHHHGGGCFHHHHHGHGHHHHHHEHHHHHHHHHHHHHHHHGGHHHHFFFGGGGGGFFFG.FGFGGGFFFGGGGGFFGGFFGFGGGFF0A?B=AF/9FFFFE?BFFFFFFFFFFFFE/BFFFFFBF/FF:;BFFFFBBFF/BBFEFA..D./ NM:i:0 MD:Z:251 MC:Z:251M AS:i:251 XS:i:0
757 M01659:202:000000000-BLMFJ:1:1101:13382:2591 81 fliC_m,p,t,u_Salmonella.enterica_Haelsingborg_AY353410_g,m__1527 1107 0 251M fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518 725 0 TAAAATTACAGTAAATGGGGCTGAATATACTGCTAACGCCGCGGGTGATAAGGTCACCTTAGCTGGCAAAACCATGTTTATTGATAAAACAGCTTCTGGCGTAAGTACATTAATCAATGAAGACGCTGCCGCAGCCAAGAAAAGTACCGCTAACCCACTGGCTTCAATTGATTCTGCATTGTCAAAAGTGGACGCAGTTCGTTCTTCTCTGGGGGCAATTCAAAACCGTTTTGATTCAGCCATTACCAACC 9FFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFGGAGGGGGGGGGGGGGGHFHGHGHGHHHHHGHHGGHHGHHHHHHHHHHHHHHHHHGHHGGGGGHHHHHFHHHGHHHHHHHHHGGDDGGGGGGGGGHHHHGHHHHHHGGGGGGHHFEHHHHHHGHHHHHHHHHHHHHHHGHHHHHGHHHHHHGGGGGHHHGGGGHHHHHHHHGGGGHHHHHHHGHGGFEGGHHGGGGGGGGGGFFFFFBCCCCCB NM:i:0 MD:Z:251 MC:Z:251M AS:i:251 XS:i:251
758 M01659:202:000000000-BLMFJ:1:1101:13382:2591 161 fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518 725 6 251M fliC_m,p,t,u_Salmonella.enterica_Haelsingborg_AY353410_g,m__1527 1107 0 ACACTGCGGTTAACCTATTCAAGACGACTAAATCTACTGCTGGTACCGATGAAGCCAAGGCGATAGCTAGTGCCATTAAGGGTGGTAAGGAAGGAGATACCTTTGATTATAAAGGTGTGTCTTTTACTATTGATACAAAAGCTGGTAATGACGGTAATGGTACGGTTTCTACTACTATCAATGGTGAAAAAGTTACGTTAACTGTCGCTGATATTACCGCTGGTGCAGCGAATGTTAATGATGCCACCTTA AAAABFFBBBBBGGGGGGGGGGHHHGGGGGHHHHCHGHHHHHGFFHHGGFGHHF3GHGHGEGGFDGHHHHHFFGFHHHHHHGFFGEHGHHHHHGHHHHHHGHHHHHHHHHGFDGHBFGEGFHFFFFFHHGHHHHGHHHGHFHHEHHHHHEFGD@?GFHFH1?GGCGFDHHGFHHHHHHGHGGHFHHEHFD<DDDFFCGHHGHHHCGGAEF?HHEGFGF.-BFAFFEFBFGGGGFGGGE/B/;/BFFBFFFF NM:i:0 MD:Z:251 MC:Z:251M AS:i:251 XS:i:246
759 M01659:202:000000000-BLMFJ:1:1101:12690:3621 97 fliC_d_Muenchenstr_AOXN01000006_b,d,j__1509 1 0 215S33M fliC_g,m_Enteritidisstr_ALGF01000038_g,m__1506 1 0 ATCGGCAATCTGGAAGCAAAGTTTAATGATAATTTTGCAAAAATAATGCGTGGAATAATGATGCATAAAGCGGCTATTTCGCAGGCTAAGAAAAAGATCGGGGGAAGTGAAAAATTTTCTAAAGTTCGAAATTCAGGTGCCGATACAAGGGTTACGGTGAGAAACCGTGGGCAACAGCCCAATAACATCAAGTTGTAATTGATAAGGAAAAGATCATGGCACAAGTCATTAATACAAACAGCCTGTCG ABCABBCCFFFFGGFGGGGGGGHHHHHHCHHHHHHHHHHFHFHHHHHHHGEGGDHHHHHHHHHHHHHHHBHGGGGGHGHGFGGGGGHHHHGHHHHGGHHHGGGGGGGGHHHHGHHHHHHHHGHHHHHGHHGHHHGHGGHHHGGGGGHHGHGGHHHGCGHGHHGHHHGEECGGFGHHHEGGGGGGGGGGGGGGGGGBFGGGGGGGGGGGGGGGFFFFFFBFEFFFFBFFFFFFFFFFFFFFFFFFFFFE NM:i:0 MD:Z:33 MC:Z:119S132M AS:i:33 XS:i:33
760 M01659:202:000000000-BLMFJ:1:1101:12690:3621 145 fliC_g,m_Enteritidisstr_ALGF01000038_g,m__1506 1 0 119S132M fliC_d_Muenchenstr_AOXN01000006_b,d,j__1509 1 0 TTCGGGGGAAGTGAAAAATTTTCTAAAGTTCGAAATTCAGGTGCCGATACAAGGGTTACGGTGAGAAACCGTGGGCAACAGCCCAATAACATCAAGTTGTAATTGATAAGGAAAAGATCATGGCACAAGTCATTAATACAAACAGCCTGTCGCTGTTGACCCAGAATAACCTGAACAAATCTCAGTCCTCACTGAGTTCCGCTATTGAGCGTCTGTCCTCTGGTCTGCGTATCAACAGCGCGAAAGACGAT -;DABB/FFFFFFFFFB:.B;/B0BC.AACBFFBCBGGFAA--??GGFGGGG.HGDFHGGEHFGFEE<-@CCHD0HHHGFFGBHHHGFBGFFHHGC1<DHFHGGHHEHHHDBGGHFHFHHGGBGFDF3BFFGFGHHGGGHHHHHGGGGFGGGHGHHFFGHGHHHHHFFHGHHHHGHGEFDFFHHGBFEHHGFHHHGGGE0F5BGHGGGCGHGFGGHFAHG2DGGFGGGHGGGGGGGGGGAAFFBBAABAA> NM:i:0 MD:Z:132 MC:Z:215S33M AS:i:132 XS:i:132
761 M01659:202:000000000-BLMFJ:1:1101:8195:4770 97 fliC_g,t_Salmonella.enterica_Agodi_AY353407_g,m__1518 194 0 251M fliC_g,m_Enteritidisstr_ALHV01000088_g,m__1506 371 0 CCCGTAACGCTAACGACGGCATTTCTATTGCGCAGACCACTGAAGGTGCGCTGAATGAAATTAACAACAACCTGCAGCGTGTGCGTGAGTTGTCTGTTCAGGCCACTAACGGGACTAACTCTGATTCCGATCTGAAATCTATCCAGGATGAAATTCAGCAACGTCTGGAAGAAATCGATCGCGTTTCTAATCAGACTCAATTTAACGGCGTTAAGGCCCTGTCTCAGGACAACCAGATGAAAATCCAGGTT >AAA?>A11AAAEG?AAA0EEEED2DGFFBFEC?EEFFFFHG1FFB1A1EE@/B1@@1@DGHHEGHDFEGC?FGGG1GE>A/>>E?EECEFEGHBFGFFH2BFFHGHH1FCGC/CCG111<>112>GFGGC/GB1DDGFFHFDHH1<GFHHGB<<DBG0D/.-<./C<</:./GGG.:..-.9;A-9B000:0;B//:9/;B0B0FA?-99-;E///-;--9;/;BF//-9-9-:9-;BB;FB/9//9/9/ NM:i:3 MD:Z:208T5A1T34 MC:Z:250M AS:i:236 XS:i:236 XA:Z:fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518,+194,251M,3;fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518,+194,251M,4;fliC_f,g_Rissenstr_AHUI01000019_g,m__1506,+194,251M,4;fliC_g,z62_Salmonella.enterica_II.9,46:g,z62:-_AY353415_g,m__1515,+194,251M,5;fliC_g,z62_Salmonella.enterica_II.50:g,z62:e,n,x_AY353416_g,m__1515,+194,251M,5;
762 M01659:202:000000000-BLMFJ:1:1101:8195:4770 145 fliC_g,m_Enteritidisstr_ALHV01000088_g,m__1506 371 0 250M fliC_g,t_Salmonella.enterica_Agodi_AY353407_g,m__1518 194 0 ATCGCGATTCTAATCAGACTCAAATCAACGGTGGTAAAGGCCTGTCTCAGGACAACCAGATGAAAATCCAGGTTGGTGCTAACGATGGTGAAACCATTACCGTCGATCTGCAAAAAATTGATGTGAAAGGCCGTGGCCTTGATGGGTACAATGTTGAGGGGCCAAAAGAAGCGACAGTGGGTGATCTGAAATCCAGCTTCAAGACAGTTACGGGTTACGACTGCTACGCAGCGGGTGCCGATAAATATCG ;-9:-//B;//FFB9;/BA//;//:-;9--9/B090;/..;//90/BFB0FA;;00;00000;990/;./.....0C:C.:;</0DD=0=.DD00DCC>-<-./<?1111A<>222@1<@22@211@/</@>/<?/1111FFGF22B21BEF0BB/?//GF/GF@BFEF/GFBB1>/F0FGFCG@2FD1B1A0B11B12ABA1D12/A/EAA1FA0F/BB12000B0B00EE0A11?CA3333D11>111 NM:i:16 MD:Z:6T16T1T7T5T61A26A3T14T7A1T46A0T15A0C3T23 MC:Z:251M AS:i:170 XS:i:170
763 M01659:202:000000000-BLMFJ:1:1101:20739:5221 97 gntR-family-regulatory-protein_dt-positive__291 111 0 124M gntR-family-regulatory-protein_dt-negative__291 111 0 ATCCAACTACGATCTTGATGTAGATCCCACTCCTGCATTTTTCCTGAGAAACGATTTGACTTAGTTTTTGTATGGGAATAATTTCTCCTCGTCAGCATTGGATACAATATCATATATCATTGAT AAAAA1CBFC1A1GFFGDGFA3F3GHHHFGAGEGFGGGFGDHCHFEGHFDF0//AG/FGHBG1GBGHHEEADGGH00FGBDHHHBGHFHGG>EHEFGDE@11F2CGGFFFHDEDF2D@@FGFBE NM:i:6 MD:Z:3T3C30C49C0T4A29 MC:Z:124M AS:i:96 XS:i:96 XA:Z:gntR-family-regulatory-protein_dt-negative__291,+111,124M,6;
764 M01659:202:000000000-BLMFJ:1:1101:20739:5221 145 gntR-family-regulatory-protein_dt-negative__291 111 0 124M gntR-family-regulatory-protein_dt-positive__291 111 0 ATCCAACTACGATCTTGATGTAGATCCCACTCCTGCATTTTTCCTGAGAAACGATTTGACTTAGTTTTTGTATGGGAATAATTTCTCCTCGTCAGCATTGGATACAATATCATATATCATTGAT 11BHFFFHCF@1FFGFHFDBFGF@//EGF/GF1F1FHG>G0BFHFHGGCEG?HHGDBBD11HGE/FHGHFFHGGA2G21DHGG0A0?E0GFHFAFA3AA33GGA33F3AEFGFFFFDDB111A> NM:i:6 MD:Z:3T3C30C49C0T4A29 MC:Z:124M AS:i:96 XS:i:96 XA:Z:gntR-family-regulatory-protein_dt-positive__291,-111,124M,6;
765 M01659:202:000000000-BLMFJ:1:1101:11251:5664 81 fliC_f,g,t_Salmonella.enterica_Berta_AY353532_g,m__1527 1421 0 107M41S fliC_f,g,s_Salmonella.enterica_Agona_AY353384_g,m__1518 1412 0 CGGAAGTTTCTAATATGTCTAAAGCGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGC DHHHFCFD1D1HFHHGHHFFEGGGGHHHHHHGCHHHHFHHGHGHHHHHGGFGGHFG@FGGGHHFGGGHHGFHFFEEEGGHGGGEEGGHGFHGBBHHGEGFFEGFHGGGGFFDEDHHHHHHGECGGHGGFFGGGGGFFDFFFFFBBBBB NM:i:0 MD:Z:107 MC:Z:107M41S AS:i:107 XS:i:107
766 M01659:202:000000000-BLMFJ:1:1101:11251:5664 161 fliC_f,g,s_Salmonella.enterica_Agona_AY353384_g,m__1518 1412 0 107M41S fliC_f,g,t_Salmonella.enterica_Berta_AY353532_g,m__1527 1421 0 CGGAAGTTTCTAATATGTCTAAAGCGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGC 3AA?AACFFFFFGGGGGGGGGGHGHGGGGGHHCHHHHHHGHHGHHGBGFHFHGFHHFFFHHCDFC0EAEEEGHHGHHHHDFGGGHHG1GAEGFHHHHGHHHHGGGGEDHFGDFG?CCFFGHH1GHDGG?FG0..<DGBGHGHF0<GFE NM:i:0 MD:Z:107 MC:Z:107M41S AS:i:107 XS:i:107
767 M01659:202:000000000-BLMFJ:1:1101:15808:5869 137 fliC_f,g,s_Salmonella.enterica_Agona_AY353384_g,m__1518 1417 0 102M149S = 1417 0 GTTTCTAATATGTCTAAAGCGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGCAGCGAAAGCTGCCTTTTTTAATTCCGGAGCCTGTGTAATGAAAGAAATCACCGTCACTGAACCTGCCTTTGTCACCCGCTTTTCCTGTTCTGGCTCGGCCTGTCGCGA A>AABFFFFFFFGGGGGGGGGGGGGHHHHHHHHHHHHGHHGHHGHHHGGHGGFHEH?EFE?EGGGGGHHGHHHHGGGGFHHGFFGGHHHHFHHHHHHGGDGGFHHGGGGGGHGFGFFFHGDDGFGGFHGHGFGGHFHHHHHFEHGGGGCGGCHHGFHHHHFGGGGFGF/BA?9EFFCFFFGGGEBBFF?FF/BFBD9A.DFFEFF?FFFFF9FF/:BBB.B--9AFBFFEBFFFFFFFFFFFA..:F?A;; NM:i:0 MD:Z:102 AS:i:102 XS:i:102
768 M01659:202:000000000-BLMFJ:1:1101:23876:5926 81 fliC_g,s,t_Senftenbergstr_AOXW01000066_g,m__1506 402 0 250M fliC_g,m_Enteritidisstr_ALHN01000008_g,m__1506 299 0 TGTTAAAGTCCTGTCTCAGGACAACCAGATGAAAATCCAGGTTGGTGCTAACGATGGTGAAACCATTACCATCGATCTGCAAAAAATTGATGTGAAAAGCCTTGGCCTTGATGGGTTCAATGTTAATGGGCCAAAAGAAGCGACAGTGGGTGATCTGAAATCCAGCTTCAAGAATGTTACGGGTTACGACACCTATGCAGCGGGTGCCGATAAATATCGTGTAGATATTAATTCAGGTGCTGTAGTAACT B/BFFFFFFFFB:0BFFFBGDDFFEGFFF0FGGFB/FFF?GFFGEHGGHHHFGC00HHFHG<EHHG0<DGHFHFHGGFFCGHHHHHDHHHGFHHHHHFHFHHHHHF2@DBGCAGHGHHHHEGBGHHFGFHGFHHHHGHGHEHHFGGGHHHHHHHGHGFFGFBGFHGF4HHHHHHHGFGEGHHEGEA?GFFFFHHHHFGGFEDGFCECFGFFFHFFHCEHFBHGFFCHCGGGGGGFGGGFFFFFFFBCCCB NM:i:0 MD:Z:250 MC:Z:251M AS:i:250 XS:i:250
769 M01659:202:000000000-BLMFJ:1:1101:23876:5926 161 fliC_g,m_Enteritidisstr_ALHN01000008_g,m__1506 299 0 251M fliC_g,s,t_Senftenbergstr_AOXW01000066_g,m__1506 402 0 CTAACGGGACTAACTCTGATTCCGATCTGAAATCTATCCAGGATGAAATTCAGCAACGTCTGGAAGAAATCGATCGCGTTTCTAATCAGACTCAATTTAACGGTGTTAAAGTCCTGTCTCAGGACAACCAGATGAAAATCCAGGTTGGTGCTAACGATGGTGAAACCATTACCATCGATCTGCAAAAAATTGATGTGAAAAGCCTTGGCCTTGATGGGTTCAATGTTAATGGGCCAAAAGAAGCGACAGTG AA3AAABB2DFFGGGGGGGGGGHGFGGFFFFFGHHFFDCGHBFHHGHHEFHEFFHHFGHHFEF5EGGHHHHGHGHGGGEGGHHHHHHHGHHFHHHGHHHHGGGEHEEFGHHFFGHHGHGHHHHHAFHHGGFHHGDGHHH1FFFB1FGDEFFGF>GGGHGGFGFGHHHGHFDHBDGHF0.GGHHGGHEC@CFG0CGFGGFHHHHAGHFB/:C/C9;00.B?FGBFFBFB0FF0:...9B./A.B9@?>--:9 NM:i:0 MD:Z:251 MC:Z:250M AS:i:251 XS:i:251
770 M01659:202:000000000-BLMFJ:1:1101:8912:6914 81 O:23-gene2__1146 312 60 185M = 312 -185 GGGATCGCTTGCCGCATATTATGCTGGTGTTCATAAGATTATCGCGATGCTTGAAGGGTTAGGTTTTTTATTTACCGAACAACCATCTGGGATTCCCCAAAAGACAAAAATCCTAAAAAGAATACAGATTCTGCTCTATAGAATAGCTTTTAAGAAAATTAATACACTTATTGTACTTAATGAAG HGGHGGHGGGGGGGHHHHHHHGHGHGHHHHHHHHHHBHGGGGGGGHHHHHHHHHHHHHHHHGGGGHHGHHHGHGGGHHGGHHHHHHHHHHHHGGGGGHHHHHHHGHHHHHHHHHHIIIHHHHHHIHIHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGFGFGGGGFFFFFFFFCCBAA NM:i:0 MD:Z:185 MC:Z:185M AS:i:185 XS:i:116
771 M01659:202:000000000-BLMFJ:1:1101:8912:6914 161 O:23-gene2__1146 312 60 185M = 312 185 GGGATCGCTTGCCGCATATTATGCTGGTGTTCATAAGATTATCGCGATGCTTGAAGGGTTAGGTTTTTTATTTACCGAACAACCATCTGGGATTCCCCAAAAGACAAAAATCCTAAAAAGAATACAGATTCTGCTCTATAGAATAGCTTTTAAGAAAATTAATACACTTATTGTACTTAATGAAG A?>AABBBFB@AGCCCEGGGFGHHHHHGFGFGBHFF5BFGHGHHGGAEEGHHHGEFGFFHHFEEFHGGGEHHHHHHGGGGGHHGGGGFHHHHHHHHHHHGHEHGHGHHHHGHFHHHHFHGGHHHHHHHHHGGHGFHHFHHHHHHGHGBDGHHGHHBFHHHFEHHGFHHBGHHHHHHHHFHHFHDG NM:i:0 MD:Z:185 MC:Z:185M AS:i:185 XS:i:116
772 M01659:202:000000000-BLMFJ:1:1101:27485:7939 81 fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518 1122 0 251M fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 813 0 ATATACTGCTAACGCCGCGGGTGATAAGGTCACCTTAGCTGGCAAAACCATGTTTATTGATAAAACAGCTTCTGGCGTAAGTACATTAATCAATGAAGACGCTGCCGCAGCCAAGAAAAGTCCCGCTAGCCCACTGGCTTCAATTGATTCTGCATTGTCAAAAGTGGACGCAGTTCGTTCTTCTCTGGGGGCAATTCAAAACCGTTTTGATTCAGCCATTACCAACCTTGGCAATACGGTAACCAATCTGA F////BFBEB@@@@@@@@-FFFBFFFFFFC9099C0GEBC909.;0;/BC0F0B;0BFFB;/FF;::///.C??A.GGC0DD0GFG<0D0GHHDDCCE>-<--@A/F/1?@DF>>1D1FC>//B1B0B/FBFF0GAG1GF1EBHHHFBFFBFGE1EGF1HHFD1>/EGGHHF>/E/0HEB10FGAEGFF1AF22A/0CAAAEA0ADGFDF1FGBHF2BFA0EAFAFGCBF3ABGGA11GD111DFFAAAAA NM:i:2 MD:Z:121A6A122 MC:Z:248M AS:i:241 XS:i:241
773 M01659:202:000000000-BLMFJ:1:1101:27485:7939 161 fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 813 0 248M fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518 1122 0 GGAAGGAGATACCTTTGATTATAAAGGAGTGTCTTTTACTATTGATACAAAATCTGGTAATGACGGTAATGGTACGGTTTCTACTACTATCAATGGTGAAAAAGTTACGTTAACTGTCGCTGATATTACCGCTGGTGCAGCGAATGTTAATGATGCCACCTTACAATCAAGCAAAAATGTTTATACATCTGTAGTGAACGGTCAGTTGACTTTTGATGATAAAACTAACAAAGAGAGTGCGAAACTTT 1A1A1ACA1C11AGBGG3GFGG3AF110AFC33EDDF3B1FGFH22211BFE1BDFBG12DEDEAE?CBAAB12DECF/EHHGFHFB1EG1GFEFFB@GDFHA/1BF2/0BF/F2D@1>CEGGGE2FGHEECG@>0FDGDBE/CGFB2FFFHBGHBF11<011111111<11F010<FG11F11111111==FG>FFHFG...<C==0D0D=D0F:;C000;C00000/:0.::CFA/;;AC-9@FE0 NM:i:6 MD:Z:27T24G154T17C2A2C16 MC:Z:251M AS:i:218 XS:i:218
774 M01659:202:000000000-BLMFJ:1:1101:24516:8087 73 fliC_m,t_Salmonella.enterica_Oranienburg_AY353412_g,m__1527 1474 0 54M197S = 1474 0 GTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGCAGCGAAAGCTGCCTTTTTTAATTCCGGAGCCTGTGTAATGAAAGAAATCACCGTCACTGAACCTGCCTTTGTCACCCGCTTTTCCTGTTCTGGCTCGGCCTGTCGCGACCACTGTTGTAAGGGCTGGAAAATCACGCTGGATAAGACGACGGTCAA CCCCCFFFCCCCGGGGGGGGGGHHHHGGGGGHHGHHGGHHHHHHHHHHHGGGGGHHHGGGGGGHGHHHHHHHGGGGGGGHGHHHHHHGHHHHHHHHGGGGGGGGHHHHHHHHHGHHHHHHGDGGGGHHHHHHHHHHHHHHGHHHHHHGHGGGHHHBGHHGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFFFFFEFFFFFCFFFFFFFFFFFFBFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFADDF NM:i:0 MD:Z:54 AS:i:54 XS:i:54
775 M01659:202:000000000-BLMFJ:1:1101:16523:9396 81 fliC_g,m,s_Montevideostr_AHIK01000035_g,m__1506 1 0 161S90M fliC_g,m_Enteritidisstr_ALGC01000031_g,m__1506 1 0 ATAATGATGCATAAAGCGGCTATTTCGCAGGCTAAGAAAAAGATCGGGGGAAGTGAAAAATTTTCTAAAGTTCGAAATTCAGGTGCCGATACAAGGGTTACGGTGAGAAACCGTGGGCAACAGCCCAATAACATCAAGTTGTAATTGATAAGGAAAAGATCATGGCACAAGTCATTAATACAAACAGCCTGTCGCTGTTGACCCAGAATAACCTGAACAAATCTCAGTCCTCACTGAGTTCCGCTATTGAG FFFFFFFFFFFFFFFFDGGGGGGGAGGGGGGGGGGGGGGGGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHGHGHHHHHHHGGGF@GHGHHHHHHHGGHFGHHHHHHGGFGGGHHHHHHHGHHHHHGHHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHFHHHHHHHHHHHHHHHHHHHHHGGGFGCGHHHHHHHGHHHHHHHHHHGHHHHHHHHHHHHHGHHGGGGGGGGGGGBBBFFFFBBBBA NM:i:0 MD:Z:90 MC:Z:195S56M AS:i:90 XS:i:90
776 M01659:202:000000000-BLMFJ:1:1101:16523:9396 161 fliC_g,m_Enteritidisstr_ALGC01000031_g,m__1506 1 0 195S56M fliC_g,m,s_Montevideostr_AHIK01000035_g,m__1506 1 0 GTTTAATGATAATTTTGCAAAAATAATGCGTGGAATAATGATGCATAAAGCGGCTATTTCGCAGGCTAAGAAAAAGATCGGGGGAAGTGAAAAATTTTCTAAAGTTCGAAATTCAGGTGCCGATACAAGGGTTACGGTGAGAAACCGTGGGCAACAGCCCAATAACATCAAGTTGTAATTGATAAGGAAAAGATCATGGCACAAGTCATTAATACAAACAGCCTGTCGCTGTTGACCCAGAATAACCTGAA AAAA?FFDFFFFFFGFGGGGFFHGHHHHHGGGGGGHGHHHCFGFEHHHFHHEC?FEHHFHHGGDCDFHHHHHFFFEGHFA1EECE/?GGHGEFGGHFGFHFEGFHHHGEHFHHEGGH3B2FDB@DCDHGHGGFHHFGHFFFFFHHHCEHGGAGFFHHGHGEHHBGFHGBGFGCFHHFGFHHGFFGGGGGBBFAFFGGGGGGGGGGG0CFGGFFGBFF0;AB.ABFFFEEFD9//9BFFFFE/;FB/;FFFB NM:i:0 MD:Z:56 MC:Z:161S90M AS:i:56 XS:i:56
777 M01659:202:000000000-BLMFJ:1:1101:13999:9488 81 O:23-gene1__1029 311 60 76M = 311 -76 TCACAGGTACCTTGACTCTACTGGCTGCAATGCAAAGTGCAAATGTAAATAATTTGATTTTTAGTTCGTCTGCTAC HHHHHHHHGHHGHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGGGGGGCDCFFFFCCCCC NM:i:0 MD:Z:76 MC:Z:76M AS:i:76 XS:i:0
778 M01659:202:000000000-BLMFJ:1:1101:13999:9488 161 O:23-gene1__1029 311 60 76M = 311 76 TCACAGGTACCTTGACTCTACTGGCTGCAATGCAAAGTGCAAATGTAAATAATTTGATTTTTAGTTCGTCTGCTAC CCCCCFCFFFFFGGGGGGGGGGHHHHGGHHHHHHHHHGHHHGGHHDGHHHHFHHHHHHHHHHHHFHIGGGGGHHHH NM:i:0 MD:Z:76 MC:Z:76M AS:i:76 XS:i:0
779 M01659:202:000000000-BLMFJ:1:1101:20513:9766 97 O:23-gene1__1029 867 60 119M = 867 119 CTATAATATTGTCGCGCGAAGAAATGGTGATTTAGACAAATCTTGGGCTGATACTGAAAAAGCCAGAAACCTCCTGGGGTGGGAGGCAAAATATGGAATAGAGGATATGTTGCAAGATG BBBBAFF@DDFFGEGG?EAAF?FEA535A5BABABGDA2GH355AFFAGD1AFGHD5GHHH1GEHHGB3?1BGFFE3EEFE/EAFGGE0BE3GHH3333BD3B0GCDGF4F44F???DD NM:i:1 MD:Z:15A103 MC:Z:119M AS:i:114 XS:i:0
780 M01659:202:000000000-BLMFJ:1:1101:20513:9766 145 O:23-gene1__1029 867 60 119M = 867 -119 CTATAATATTGTCGCGCGAAGAAATGGTGATTTAGACAAATCTTGGGCTGATACTGAAAAAGCCAGAAACCTCCTGGGGTGGGAGGCAAAATATGGAATAGAGGATATGTTGCAAGATG D2FFHHHHEEE//E///2@EGF1FDFCHHEEGDFF@DHFE0FGFAA122AAAHFGHGGCGBB1BGDGFFCEHGCGCFEFFGEHFGFAFGDGBFGGDBGFGEBEBGBFFFF1FFFAAA1A NM:i:1 MD:Z:15A103 MC:Z:119M AS:i:114 XS:i:0
781 M01659:202:000000000-BLMFJ:1:1101:9746:9829 73 fliC_z4,z23_Salmonella.enterica_I.8,20:z4,z23:-_AY353544_z4,z23__1269 1211 0 59M192S = 1211 0 CTTCCGTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGCAGCGAAAGCTGCCTTTTTTAATTCCGGAGCCTGTGTAATGAAAGAAATCACCGTCACTGAACCTGCCTTTGTCACCCGCTTTTCCTGTTCTGGCTCGGCCTGTCGCGACCACTGTTGTAAGGGCTGGAAAATCACGCTGGATAAGACGACG CCDDCCFFFCFFGGGGGGGGGGGGHHGHHHHGGGGGHHGBGGGHGHHGHHHHHHGGGGGHHHGGGGGGHGHHHHHHHGGGGGGHHGFHHHHHGHHHGFFGHDGGGGGGHHHHHHHHHHGGHHHHHHGGGGGHHHHHHHHHHHHHGHHHHHHHGHGGGBHGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFFBFFFFFFFFFFFFFDFFFFFFFFFFFFFFA NM:i:0 MD:Z:59 AS:i:59 XS:i:59
782 M01659:202:000000000-BLMFJ:1:1101:22387:10758 185 fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 80 0 218M = 80 0 CCGCTATTGAGCGTCTGACCTCTGGTCTGCGTATCAACAGCGCGACAGACGATGCGGCAGGCCAGGCGATAGCTAACCGCTTAACTTCTAATATCAAAGGTGTGACTCAGGCTTCCCGCAACGCTAACGCCTGCATGTCTATTGCGCAGACCAGTGAAGGTGTGCTGAATGAAATTAACAGCAACCTGCAGAGTGTGCGTGAGTTGTCTGTTCAGGCC >9/9/F:9BA@@C;;///..:./9A99.A.;0F009.@:A-C:C:.C.<.-CCC->0>1<0CC<</??1111?/////@12>111>1222GGF2>B10<11111B00010///<//>?//?/1//>/>B011B11@1D1BBEAA/BB211A12111B0EB0B112FA222222F22B1A10FAB01F1AAA0E00EB1A111AB111CDBBB11111> NM:i:13 MD:Z:17T27A24T11C18C16T10A1G4T16C8C17A10C26 AS:i:153 XS:i:153
783 M01659:202:000000000-BLMFJ:1:1101:22383:10770 97 fliC_g,t_Salmonella.enterica_Agodi_AY353407_g,m__1518 80 0 218M fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 80 0 CCGCTATTGAGCGTCTGTCCTCTGGTCTGCGTATCAACAGCGCGAAAGACGATGCGGCAGGCCAGGCGATTGCTAACCGCTTCACTTCTAATATCAAAGGTCTGACTCAGGCTTCCCGTAACGCTAACGACGGCATTTCTATTGCGCAGACCACTGAAGGTGCGCTGAATGAAATTAACAACAACCTGCAGCGTGTGCGTGAGTTGTCTGTTCAGGCC CCDDCCCFFFFFGGGGGGGGGGHGHHHHHHGGGGHHHHHHHGGGGGGGHHGGGGGGGGGGGGGHHHHGGGHGHHHHHHGFGGGHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHGHGGGGGGGGHGGGGGGGGHHHHHHHHHGGGGGHHHHHGGGGGGGGGGGGGGGGGGGGGGGGGGGGGFFFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFF NM:i:0 MD:Z:218 MC:Z:218M AS:i:218 XS:i:218
784 M01659:202:000000000-BLMFJ:1:1101:22383:10770 145 fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 80 0 218M fliC_g,t_Salmonella.enterica_Agodi_AY353407_g,m__1518 80 0 CCGCTATTGAGCGTCTGTCCTCTGGTCTGCGTATCAACAGCGCGAAAGACGATGCGGCAGGCCAGGCGATTGCTAACCGCTTCACTTCTAATATCAAAGGTCTGACTCAGGCTTCCCGTAACGCTAACGACGGCATTTCTATTGCGCAGACCACTGAAGGTGCGCTGAATGAAATTAACAACAACCTGCAGCGTGTGCGTGAGTTGTCTGTTCAGGCC FFFFFFFFFFFCEFAFA.GEGFFEGGGGGEGGGFGFGGGGFGCGHGHHHGGGGCGFHGHHHAHGGGGHHHHHHGGGGGHHHHHHHHHHHHHHHHHHHFHHHHHHGHHHGHHGGGGGGGGGGGHGHGGGGGGHHHHGGBHHGGGGGHHHGHHHHHHHHHGGGGGHHHHHHHHHHHHGHHHHGHHHHHHGGGGGHGGGGGGGGGGGGGFFFFFFCCCBAA NM:i:0 MD:Z:218 MC:Z:218M AS:i:218 XS:i:218
785 M01659:202:000000000-BLMFJ:1:1101:19007:10881 97 fliC_f,g,t_Salmonella.enterica_Berta_AY353532_g,m__1527 1411 0 117M134S fliC_f,g,s_Salmonella.enterica_Agona_AY353383_g,m__1518 1429 0 GACTATGCAACGGAAGTTTCTAATATGTCTAAAGCGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGCAGCGAAAGCTGCCTTTTTTAATTCCGGAGCCTGTGTAATGAAAGAAATCACCGTCACTGAACCTGCCTTTGTCACCCGCTTTTCCTGTTCTGG ACCCCFFFFFFCGCGGGGGGGGHHHHHHHHHHHHHGGCGGHHHHHHHHHHHHGGGFGHHHHFGGHHHGHHHGGGGGGGGGGGHGGHHHHGGGGFHGGHHGGHHGHHHHHHHHGGGGGHHHGGGGGCHGHHHHHHFGGGGGG<GFGHHHHHGHHGHGHHGGGGGGGGGGGGGGGGGGGGGGGGFGGGGFFFFFFFFFFFFFFFFFFFFFFFFFDFFFFFFFFFFFFFFFFFFFFFFAFFDEFFFFFFFFFFF NM:i:0 MD:Z:117 MC:Z:90M161S AS:i:117 XS:i:117
786 M01659:202:000000000-BLMFJ:1:1101:19007:10881 145 fliC_f,g,s_Salmonella.enterica_Agona_AY353383_g,m__1518 1429 0 90M161S fliC_f,g,t_Salmonella.enterica_Berta_AY353532_g,m__1527 1411 0 TCTAAAGCGCAGATTCTGCAGCAGGCTGGTACTTCCGTTCTGGCGCAGGCGAACCAGGTTCCGCAAAACGTCCTCTCTTTACTGCGTTAATCCGGCGATTGATTCACCGACACGTGGTACACAATCAAGGCAGCGAAAGCTGCCTTTTTTAATTCCGGAGCCTGTGTAATGAAAGAAATCACCGTCACTGAACCTGCCTTTGTCACCCGCTTTTCCTGTTCTGGCTCGGCCTGTCGCGACCACTGTTGTAA FB999-DFF/B/BFFFFFFEFFFE?FB/://?EFDD9FAB;.ACA.A:-@F9/FF.EDB--@/9.FEDGGEGFEGFB;;0A?AAFFF0DE;GDACFHGHHGHHFGCGDFHHHGHHGBHFGGFHBHHHHFDCDE/DHGEGGGHGGGFHHHGHGGGGGGHFGHHGHHGHFFHFHHGHHEFC?1GGHFGEHHGGFGGHHFHHHHGG>>CGGHHHGFHHHHGHHHHGGGGGGGGCGGGGCGGGFFFC4FFAAABA NM:i:0 MD:Z:90 MC:Z:117M134S AS:i:90 XS:i:90
787 M01659:202:000000000-BLMFJ:1:1101:28780:10887 97 fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 109 0 249M fliC_g,m,s_Montevideostr_AETU01000047_g,m__1506 288 0 CGTATCAACAGCGCGAAAGACGATGCGGCAGGCCAGGCGATTGCTAACCGCTTCACTTCTAATATCAAAGGTCTGACTCAGGCTTCCCGTAACGCTAACGACGGCATTTCTATTGCGCAGACCACTGAAGGTGCGCTGAATGAAATTAACAACAACCTGCAGCGTGTGCGTGAGTTGTCTGTTCAGGCCACTAACGGGACTAACTCTGATTCCGATCTGAAATCTATCCAGGATGAAATTCAGCAACGT AA>AACFFFFFFGGGGGGGGGGGGGGGGCFGGEFEFAGFGGHGHGHHHGG@EFEFHHHFHHHHHHHHHHFHFFHHHHHHHHGHHHGGHG?EGGGGGGGHGGGFGGGGHGHHFHHHHGGGGGHHFHHHFHHGGFHDCGFDFHHHHHHFHHHHHGHHGGGGGGGGGFDGGGGGGGGFGGGGGFFGGFFFFFFFFFFFFFFDFFFFFFFFFFFEFFFD?DFFF/BFFFFFE/BFBEBFFEFFFFFFFFFFFE NM:i:0 MD:Z:249 MC:Z:251M AS:i:249 XS:i:249
788 M01659:202:000000000-BLMFJ:1:1101:28780:10887 145 fliC_g,m,s_Montevideostr_AETU01000047_g,m__1506 288 0 251M fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 109 0 TGTTCAGGCCACTAACGGGACTAACTCTGATGCCGATCTGAAATCTATCCAGGATGAAATTCAGCAACGTCTGGAAGAAATCGATCGCGTTTCTAATCAGACTCAATTTAACGGTGTTAAAGTCCTGTCTCAGGACAACCAGATGAAAATCCAGGTTGGTGCTAACGATGGTGAAACCATTACCATCGATCTGCAAAAAATTGATGTGAAAAGCCTTGGCCTTGATGGGTTCAATGTTAATGGGCCAAAAG ;//BA9...00.A:9-90F9B0FFC:90/;9-9AGG00GHGHC<:0FGHF:0FGEHHFGFDHGDGC.<.0G<1BGDFEFHE>.-//@ECF>2GHFHHGDFGD2HGD3?DCHCFHFHHHFGC?0GHFGEGDGGHGFGFFFHFHHHFHGBHFFHHFAGGHGGFFHHHGEHHHHG5GFHFFFHGDEGADFBHFHGG?EHFGF5E335EFDFGACFCFA2GAEHHHHHFGGHGFFFFGFGGGGFABFFBFBBAA> NM:i:1 MD:Z:31T219 MC:Z:249M AS:i:246 XS:i:246
789 M01659:202:000000000-BLMFJ:1:1101:20761:10965 81 O:23-gene1__1029 675 60 219M = 675 -219 TGACACAATTGATGGCACTGGCATGCGAGATTATATTCATGTAGATGATTTAGCTGAAGGACATGTCAAGACATTAGAATACATGTTATCAACAAAAGTAGGTTATGATGTTTTTAATTTGGGGTCAGGTCGAGCATATAGTGTTTTGCAAATCATTAAAGCTTTTGAGCGCGTCACTAAAAAAGAGATTCCCTATAATATTGTCGCGCGAAGAAATGG GGGGGGGHHHHHHHHHHHHHHGGGGHGHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHGGGHHHHHGGGGGHHGHHHHHHHHHHHHFHHHHHHHHFGHHHHHHHHGGGFGGGHHGFHHGHHHHHHHHHGCHHHHHHHGGGGGGGGGFAAFFFFFBBBBA NM:i:3 MD:Z:36A133T36A11 MC:Z:219M AS:i:204 XS:i:0
790 M01659:202:000000000-BLMFJ:1:1101:20761:10965 161 O:23-gene1__1029 675 60 219M = 675 219 TGACACAATTGATGGCACTGGCATGCGAGATTATATTCATGTAGATGATTTAGCTGAAGGACATGTCAAGACATTAGAATACATGTTATCAACAAAAGTAGGTTATGATGTTTTTAATTTGGGGTCAGGTCGAGCATATAGTGTTTTGCAAATCATTAAAGCTTTTGAGCGCGTCACTAAAAAAGAGATTCCCTATAATATTGTCGCGCGAAGAAATGG AA??A1C1BFD1FGGCGFCFFEGHHHE0A0AFHHFHHHBFE2DEBBG1D2F1D1AGH1AEAA0AC2G2FGAEGHFHA1AFFFFHGHHHHEFGFFGFHGGHEHFHHHHFHHFFHGFHFGFGBBEEEEFGBFHGEGGGHHFGHHGFHHFAGFGBFFFGFHFGB11DGFHGGHGC<AC<CHHHGHHCFGCGDDDBGGFHHHHGHFHGH?C-@C?@A?9/0;B NM:i:3 MD:Z:36A133T36A11 MC:Z:219M AS:i:204 XS:i:0
791 M01659:202:000000000-BLMFJ:1:1101:21158:11838 97 gntR-family-regulatory-protein_dt-positive__291 1 0 114S136M gntR-family-regulatory-protein_dt-negative__291 1 0 GAGTATGCCGTGATTTCCATTCAGGAACATAAAAGTATTCTGCAAGCTCTTGAACTTCATGATGAAAAATTGGCACGCCAGCGCATGCGCGAACACATTATTCGCTCGATGGAGAATATGCTGACCCGCTATGTTGGTGACCCTTCTGCCTGATCTTTTCGCCTGCGTGAGCATCGCAGGCGCTTCAACCAATTCTTCAATTCTATTAATCACGTCCAGTAACGATCCAACTACGATCTTGATGTAGATC BBABBFFFFBBDGGFGGGGGGGHGHHHHHHHHFHGEGGHHHHHHHHHHHHHGGFHHHFHHHHHHHGHHHGHHFFGHGGGGFFGGGGGGGGGGGGGHHHGGHGHHGGHGGHHGHHHFGHHFHHHHHHHGGGCGHHHFHAFHFDFHHHGFBGHHBGHHHHHHGCDDHFFGGDGFHHHGGGCCDGGGGGGGGGGGFFGGGFGGGGGGGGGGGGGGGGGFGGGFFFFFFFFFBFFEFFFFFFFFFEFFFFFBFF NM:i:2 MD:Z:113T3C18 MC:Z:31S220M AS:i:126 XS:i:126 XA:Z:gntR-family-regulatory-protein_dt-negative__291,+1,114S136M,2;
792 M01659:202:000000000-BLMFJ:1:1101:21158:11838 145 gntR-family-regulatory-protein_dt-negative__291 1 0 31S220M gntR-family-regulatory-protein_dt-positive__291 1 0 CATGCGCGAACACATTATTCGCTCGATGGAGAATATGCTGACCCGCTATGTTGGTGACCCTTCTGCCTGATCTTTTCGCCTGCGTGAGCATCGCAGGCGCTTCAACCAATTCTTCAATTCTATTAATCACGTCCAGTAACGATCCAACTACGATCTTGATGTAGATCCCACTCCTGCATTTTTCCTGAGAAACGATTTGACTTAGTTTTTGTATGGGAATAATTTCTCCTCGTCAGCATTGGATACAATAT DDD;>-A9/;9;FB:AD=;@DFFFFFB//BFBF;0B0F?AGDADBBFFA?EGBGG/CA./GE;.CBGC00C/---GC?C<@CF1FFG?GG@C0G</@CC3GHGHHHFGDG3B3FHHGDBHGGBDF?/E/?HFEGD?CEFE3HFFHHGFHHHHHFGGD4FHHHGCGEEAGFCEG55BFGAHGEHHEB5HGGHHGHHHHHHGGFFGEAGEHHHFGGAFFHHGHHGHGGEFEAGGFGGGGGCFFFFFFFBBAAA NM:i:6 MD:Z:113T3C30C49C0T4A15 MC:Z:114S136M AS:i:190 XS:i:190 XA:Z:gntR-family-regulatory-protein_dt-positive__291,-1,31S220M,6;
793 M01659:202:000000000-BLMFJ:1:1101:22842:11880 97 fliC_g,m_Enteritidisstr_ALHO01000019_g,m__1506 1 0 206S45M fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 172 0 CTGGAAGCAAAGTTTAATGATAATTTTGCAAAAATAATGCGTGGAATAATGATGCATAAAGCGGCTATTTCGCAGGCTAAGAAAAAGATCGGGGGAAGTGAAAAATTTTCTAAAGTTCGAAATTCAGGTGCCGATACAAGGGTTACGGTGAGAAACCGTGGGCAACAGCCCAATAACATCAAGTTGTAATTGATAAGGAAAAGATCATGGCACAAGTCATTAATACAAACAGCCTGTCGCTGTTGACCCAG AABCCFFDFFFFGGGGGGGGGGHHHHHHHHHHHHHHHHHHGEGGGHHHHHHHHHHHHHHHHHGGGGGHHHHHGGGGGHHHHHHHHHGGHHHGGGGGGGHHHHHHHHHHHHHHHHHHHHGHHGHHHHHHGGFHFGGGGHHHHGCGHHGGFHGHHHGHHCEHGGGGGHHHGHGHHHHHHHHGGGGFGGGEGGGGGGGGGGGGGGGGGGGGGFGGGGGGFFFFFFFFFFFFFFFFFFFFFFFEFFDFFFFEFF? NM:i:0 MD:Z:45 MC:Z:5S246M AS:i:45 XS:i:45
794 M01659:202:000000000-BLMFJ:1:1101:22842:11880 145 fliC_g,s,t_Salmonella.enterica_Senftenberg_AY353406_g,m__1518 172 0 5S246M fliC_g,m_Enteritidisstr_ALHO01000019_g,m__1506 1 0 TTAAAATCAAAGGTCTGCCTCAGGCTTCCCGTAACGCTAACGACGGCATTTCTATTGCGCAGACCACTGAAGGTGCGCTGAATGAAATTAACAACAACCTGCAGCGTGTGCGTGAGTTGTCTGTTCAGGCCACTAACGGGACTAACTCTGATTCCGATCTGAAATCTATCCAGGATGAAATTCAGCAACGTCTGGAAGAAATCGATCGCGTTTCTAATCAGACTCAATTTAACGGTGTTAAAGTCCTGTCT 9;/;//B9/FFFEFBA--B9A9--A-A;-FEE:;-C.EBA?AC-B90;;00F;;-ACGHHGC0BHGGFFHC?CCCE1HFHGFGFGDF<1EGFF?FHGHFHGGGGCHCB/GGHHGHHFHFCEHGF0EGCEHGHGGHG@F2GGD2DEG1FBHFEGEEFF2GF@GF@BB@B00BF1FHHHFHHG1FD/HFEGEEDFDG12FAFF////E/00F1DGFBFGEA1BD11GAD300EAEA13GFAD1FA1A>1A>1A NM:i:1 MD:Z:12A233 MC:Z:206S45M AS:i:241 XS:i:241 XA:Z:fliC_g,s,t_Salmonella.enterica_Missouri_AY353405_g,m__1518,-172,5S246M,1;fliC_g,t_Salmonella.enterica_Agodi_AY353407_g,m__1518,-172,5S246M,1;fliC_f,g_Rissenstr_AHUI01000019_g,m__1506,-172,5S246M,2;fliC_g,z62_Salmonella.enterica_II.50:g,z62:e,n,x_AY353416_g,m__1515,-172,5S246M,5;fliC_g,z62_Salmonella.enterica_II.9,46:g,z62:-_AY353415_g,m__1515,-172,5S246M,5;