--- a/seqsero2.xml	Tue Aug 13 08:40:57 2019 -0400
+++ b/seqsero2.xml	Wed Aug 14 17:45:41 2019 -0400
@@ -7,7 +7,7 @@
       <requirement type="package" version="1.9">samtools</requirement>
       <requirement type="package" version="2.9.1">sra-tools</requirement>
       <requirement type="package" version="0.7.17">bwa</requirement>
-      <requirement type="package" version="3.12.0">spades</requirement>
+      <requirement type="package" version="3.13.1">spades</requirement>
       <requirement type="package" version="2.27.1">bedtools</requirement>
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
@@ -34,6 +34,7 @@
         ln -s $forward ${name}_1.fastq;
         ln -s $reverse ${name}_2.fastq;
         mkdir ./output;
+        touch output/SeqSero_log.txt ;
         python $__tool_directory__/SeqSero2/SeqSero2_package.py
         -p \${GALAXY_SLOTS:-4}
         -t 2
@@ -127,9 +128,11 @@
         <test>
          <param name="mode" value="a" />
          <param name="reads_select" value="history" />
-         <param name="forward" value="forward_25k.fastq.gz" ftype="fastqsanger" />
-         <param name="reverse" value="reverse_25k.fastq.gz" ftype="fastqsanger" />
-         <output name="results" file="Seqsero_result_25k.tsv" />
+         <param name="forward" value="forward_250k.fastq.gz" ftype="fastqsanger" />
+         <param name="reverse" value="reverse_250k.fastq.gz" ftype="fastqsanger" />
+         <assert_stdout>
+         	<has_text text="predicted antigenic profile does not exist" />
+         </assert_stdout>
        </test>
        <!-- <test>
         <param name="mode" value="a" />