jpayne@17: import os, sys
jpayne@17: from distutils.core import setup
jpayne@17: from setuptools import find_packages
jpayne@4: 
jpayne@17: def readme():
jpayne@17:     with open('README.md') as f:
jpayne@17:         return f.read()
jpayne@4: 
jpayne@17: setup(name='SeqSero2',
jpayne@17:     version=open("version.py").readlines()[-1].split()[-1].strip("\"'"),
jpayne@17:     description='Salmonella serotyping',
jpayne@17:     long_description=readme(),
jpayne@17:     classifiers=[
jpayne@17:         'Development Status :: 3 - Alpha',
jpayne@17:         'License :: OSI Approved :: GNU General Public License v2 (GPLv2)',
jpayne@17:         'Programming Language :: Python :: 3',
jpayne@17:         'Topic :: Text Processing :: Linguistic',
jpayne@17:         ],
jpayne@17:     keywords='Salmonella serotyping bioinformatics WGS',
jpayne@17:     url='https://github.com/denglab/SeqSero2/',
jpayne@17:     author='Shaokang Zhang, Hendrik C Den-Bakker and Xiangyu Deng',
jpayne@17:     author_email='zskzsk@uga.edu, Hendrik.DenBakker@uga.edu, xdeng@uga.edu',
jpayne@17:     license='GPLv2',
jpayne@17:     scripts=["bin/deinterleave_fastq.sh","bin/Initial_Conditions.py","bin/SeqSero2_package.py","bin/SeqSero2_update_kmer_database.py"],
jpayne@17:     packages=[""],
jpayne@17:     include_package_data = True,
jpayne@17:     install_requires=['biopython==1.73'],
jpayne@17:     data_files=[("seqsero2_db",["seqsero2_db/antigens.pickle","seqsero2_db/H_and_O_and_specific_genes.fasta","seqsero2_db/invA_mers_dict","seqsero2_db/special.pickle"])],
jpayne@17:     zip_safe=False,
jpayne@4: )