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changeset 17:03f7b358d57f

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planemo upload
author jpayne
date Tue, 25 Mar 2025 23:22:38 -0400
parents 3b6d5b60968f
children a573df21536d
files Makefile SeqSero2/H_and_O_and_specific_genes.fasta SeqSero2/Initial_Conditions.py SeqSero2/Initial_Conditions.pyc SeqSero2/LICENSE SeqSero2/MANIFEST.in SeqSero2/README.md SeqSero2/SalmID/LICENSE SeqSero2/SalmID/README.md SeqSero2/SalmID/SalmID.py SeqSero2/SalmID/__pycache__/version.cpython-36.pyc SeqSero2/SalmID/invA_mers_dict SeqSero2/SalmID/rpoB_mers_dict SeqSero2/SalmID/version.py SeqSero2/SeqSero2_package.py SeqSero2/SeqSero2_update_kmer_database.py SeqSero2/__init__.py SeqSero2/__pycache__/Initial_Conditions.cpython-36.pyc SeqSero2/__pycache__/Initial_Conditions.cpython-37.pyc SeqSero2/__pycache__/version.cpython-312.pyc SeqSero2/antigens.pickle SeqSero2/bin/Initial_Conditions.py SeqSero2/bin/SeqSero2_package.py SeqSero2/bin/SeqSero2_update_kmer_database.py SeqSero2/bin/deinterleave_fastq.sh SeqSero2/deinterleave_fastq.sh SeqSero2/invA_mers_dict SeqSero2/scripts/SeqSero2.py SeqSero2/seqsero2_db/H_and_O_and_specific_genes.fasta SeqSero2/seqsero2_db/antigens.pickle SeqSero2/seqsero2_db/invA_mers_dict SeqSero2/seqsero2_db/special.pickle SeqSero2/setup.py SeqSero2/special.pickle SeqSero2/version.py efetch.fcgi?db=bioproject&id=PRJNA183851 output/2018_11_09_14_19_59_temp/.bin_reads/INFO_0 output/2018_11_09_14_19_59_temp/.bin_reads/merged_0_0.seq output/2018_11_09_14_19_59_temp/.bin_reads/merged_0_1.seq output/2018_11_09_14_19_59_temp/.bin_reads/paired_0_0.seq output/2018_11_09_14_19_59_temp/.bin_reads/paired_0_1.seq output/2018_11_09_14_19_59_temp/.bin_reads/single_0_0.seq output/2018_11_09_14_19_59_temp/.bin_reads/single_0_1.seq output/2018_11_09_14_19_59_temp/K127/configs/careful_mda_mode.info output/2018_11_09_14_19_59_temp/K127/configs/careful_mode.info output/2018_11_09_14_19_59_temp/K127/configs/config.info output/2018_11_09_14_19_59_temp/K127/configs/construction.info output/2018_11_09_14_19_59_temp/K127/configs/detail_info_printer.info output/2018_11_09_14_19_59_temp/K127/configs/diploid_mode.info 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