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comparison shigatyper.xml @ 4:457e96192ad1

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planemo upload
author jpayne
date Wed, 31 Jul 2019 14:12:17 -0400
parents 05691eb68d52
children b4e604288530
comparison
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3:05691eb68d52 4:457e96192ad1
34 <param label="Reverse reads" type="data" name="reverse" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz,fastq.bz2,fastqsanger.bz2" /> 34 <param label="Reverse reads" type="data" name="reverse" format="fastq,fastqsanger,fastq.gz,fastqsanger.gz,fastq.bz2,fastqsanger.bz2" />
35 </when> 35 </when>
36 </conditional> 36 </conditional>
37 </inputs> 37 </inputs>
38 <outputs> 38 <outputs>
39 <data label="${reads.coll.name} Shigella serotype determination" name="serotype_from_collection" format="sam"> 39 <data label="${reads.coll.name} Shigella serotype determination" name="serotype_from_collection" format="tabular">
40 <filter>reads['reads_select'] == 'collection'</filter> 40 <filter>reads['reads_select'] == 'collection'</filter>
41 </data> 41 </data>
42 <data label="${reads.forward.name.split('_')[0]} Shigella serotype determination" name="serotype_from_history" format="sam"> 42 <data label="${reads.forward.name.split('_')[0]} Shigella serotype determination" name="serotype_from_history" format="tabular">
43 <filter>reads['reads_select'] == 'history'</filter> 43 <filter>reads['reads_select'] == 'history'</filter>
44 </data> 44 </data>
45 </outputs> 45 </outputs>
46 <tests> 46 <tests>
47 <test> 47 <test>