# HG changeset patch
# User jpayne
# Date 1591988855 14400
# Node ID 005fdb74636ed44b9d40add4530330d0fd2bd9f1
# Parent  b4e6042885306c5c359ec9ff16531d734d58f9e9
Uploaded

diff -r b4e604288530 -r 005fdb74636e shigatyper.xml
--- a/shigatyper.xml	Tue Feb 25 14:03:44 2020 -0500
+++ b/shigatyper.xml	Fri Jun 12 15:07:35 2020 -0400
@@ -9,7 +9,7 @@
             #set reverse=$reads.coll.reverse
             #set name=$reads.coll.name
         #else
-            #set name=$reads.coll.forward.name.split('_')[0]
+            #set name=$forward.name.split('_')[0]
         #end if
 
         shigatyper -n "$name" "$forward" "$reverse" -vv >
@@ -53,7 +53,7 @@
         <test>
             <param name="reads_select" value="collection" />
             <param name="coll">
-                <collection type="paired">
+                <collection type="paired" name="CFSAN029786">
                     <element name="forward" value="CFSAN029786_S10_L001_R1_001.fastq.gz" ftype="fastqsanger.gz" />
                     <element name="reverse" value="CFSAN029786_S10_L001_R2_001.fastq.gz" ftype="fastqsanger.gz" />
                 </collection>