Mercurial > repos > jpayne > snp_pipeline

annotate test-data/samples/sample4/reads.all.pileup @ 35:1e214dac2d55

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planemo upload commit 7f6183b769772449fbcee903686b8d5ec5b7439f-dirty
author jpayne
date Fri, 02 Feb 2018 11:56:16 -0500
parents eefdd97a6749
children
rev   line source
jpayne@0 1 gi|9626243|ref|NC_001416.1| 1 G 2 ^$.^I. ..
jpayne@0 2 gi|9626243|ref|NC_001416.1| 2 G 0 * *
jpayne@0 3 gi|9626243|ref|NC_001416.1| 3 G 1 . 3
jpayne@0 4 gi|9626243|ref|NC_001416.1| 4 C 0 * *
jpayne@0 5 gi|9626243|ref|NC_001416.1| 5 G 6 ...... 03;26C
jpayne@0 6 gi|9626243|ref|NC_001416.1| 6 G 8 ........ 9>D3B?9@
jpayne@0 7 gi|9626243|ref|NC_001416.1| 7 C 6 .....^K. :8088E
jpayne@0 8 gi|9626243|ref|NC_001416.1| 8 G 8 ........ :23CA/H4
jpayne@0 9 gi|9626243|ref|NC_001416.1| 9 A 5 ..... 7A5@@
jpayne@0 10 gi|9626243|ref|NC_001416.1| 10 C 8 ........ :@78EG??
jpayne@0 11 gi|9626243|ref|NC_001416.1| 11 C 7 ....... 3@5?0:1
jpayne@0 12 gi|9626243|ref|NC_001416.1| 12 T 9 ......... 89HA=8=>C
jpayne@0 13 gi|9626243|ref|NC_001416.1| 13 C 9 ......... .=5:G<0G.
jpayne@0 14 gi|9626243|ref|NC_001416.1| 14 G 8 ........ 9<1;2F.A
jpayne@0 15 gi|9626243|ref|NC_001416.1| 15 C 7 ....... .<90A8D
jpayne@0 16 gi|9626243|ref|NC_001416.1| 16 G 8 ........ :H/0>><.
jpayne@0 17 gi|9626243|ref|NC_001416.1| 17 G 8 .......^K. 4?DB<F?;
jpayne@0 18 gi|9626243|ref|NC_001416.1| 18 G 10 .........N ;011<H0CC2
jpayne@0 19 gi|9626243|ref|NC_001416.1| 19 T 9 ......... 5D/1>9>B?
jpayne@0 20 gi|9626243|ref|NC_001416.1| 20 T 7 ....... :94@BG1
jpayne@0 21 gi|9626243|ref|NC_001416.1| 21 T 9 ......... C158F.6.E
jpayne@0 22 gi|9626243|ref|NC_001416.1| 22 T 12 ............ 3:2CA?<D8//3
jpayne@0 23 gi|9626243|ref|NC_001416.1| 23 C 9 ......... <.;=>?:7B
jpayne@0 24 gi|9626243|ref|NC_001416.1| 24 G 8 ........ 83GD28?F
jpayne@0 25 gi|9626243|ref|NC_001416.1| 25 C 6 ...... /0.CCF
jpayne@0 26 gi|9626243|ref|NC_001416.1| 26 T 11 ........... @1<H>/:78HB
jpayne@0 27 gi|9626243|ref|NC_001416.1| 27 A 7 ....... 2=:97?@
jpayne@0 28 gi|9626243|ref|NC_001416.1| 28 T 11 ..........^K. 15D61GB/@AA
jpayne@0 29 gi|9626243|ref|NC_001416.1| 29 T 12 ............ .74<34;9E27A
jpayne@0 30 gi|9626243|ref|NC_001416.1| 30 T 10 .......... /45E5H0F;>
jpayne@0 31 gi|9626243|ref|NC_001416.1| 31 A 11 ........... 639;:9<E<E;
jpayne@0 32 gi|9626243|ref|NC_001416.1| 32 T 11 ........... 6A.:=HDD3/>
jpayne@0 33 gi|9626243|ref|NC_001416.1| 33 G 10 .........^K. =B?;5G3:CE
jpayne@0 34 gi|9626243|ref|NC_001416.1| 34 A 8 ........ 9BFG<FF/
jpayne@0 35 gi|9626243|ref|NC_001416.1| 35 A 7 ....... 0>8A/;6
jpayne@0 36 gi|9626243|ref|NC_001416.1| 36 A 10 .......... 1H5841D<E4
jpayne@0 37 gi|9626243|ref|NC_001416.1| 37 A 9 ......... EFA@D1BF4
jpayne@0 38 gi|9626243|ref|NC_001416.1| 38 T 10 .......... B8D4AB?AH@
jpayne@0 39 gi|9626243|ref|NC_001416.1| 39 T 10 .......... =HFG75@DD3
jpayne@0 40 gi|9626243|ref|NC_001416.1| 40 T 12 ............ :H6/HG.7?C.B
jpayne@0 41 gi|9626243|ref|NC_001416.1| 41 T 10 .......... F>7@C?.G46
jpayne@0 42 gi|9626243|ref|NC_001416.1| 42 C 12 ............ 299AD1////BD
jpayne@0 43 gi|9626243|ref|NC_001416.1| 43 C 13 ............. /H8D@0;9F>E>/
jpayne@0 44 gi|9626243|ref|NC_001416.1| 44 G 10 .......... 7=6F2A@/>3
jpayne@0 45 gi|9626243|ref|NC_001416.1| 45 G 11 ........... @74=CHB;HD9
jpayne@0 46 gi|9626243|ref|NC_001416.1| 46 T 13 .........$.... 7H40C7E0>5E4@
jpayne@0 47 gi|9626243|ref|NC_001416.1| 47 T 8 ........ 890F9/C9
jpayne@0 48 gi|9626243|ref|NC_001416.1| 48 T 11 ........... 1034==2<>4E
jpayne@0 49 gi|9626243|ref|NC_001416.1| 49 A 8 ........ 3<F/E<GH
jpayne@0 50 gi|9626243|ref|NC_001416.1| 50 A 7 ......^K. A092:8A
jpayne@0 51 gi|9626243|ref|NC_001416.1| 51 G 7 ....... 4A10@DD
jpayne@0 52 gi|9626243|ref|NC_001416.1| 52 G 9 ......... C/B>F6<B;
jpayne@0 53 gi|9626243|ref|NC_001416.1| 53 C 12 ............ :B/3B<C/1C6C
jpayne@0 54 gi|9626243|ref|NC_001416.1| 54 G 11 ........... 5H3F>EDD?1?
jpayne@0 55 gi|9626243|ref|NC_001416.1| 55 T 14 .........N.... 1F?2;:24H79A:4
jpayne@0 56 gi|9626243|ref|NC_001416.1| 56 T 6 ...... ::3E3?
jpayne@0 57 gi|9626243|ref|NC_001416.1| 57 T 13 ......N...... @3/5D4;>:34F<
jpayne@0 58 gi|9626243|ref|NC_001416.1| 58 C 8 ........ :G029/2/
jpayne@0 59 gi|9626243|ref|NC_001416.1| 59 C 11 ........... 09E;;41.@:<
jpayne@0 60 gi|9626243|ref|NC_001416.1| 60 G 8 ........ 26G1C2F;
jpayne@0 61 gi|9626243|ref|NC_001416.1| 61 T 8 ........ =>E@0252
jpayne@0 62 gi|9626243|ref|NC_001416.1| 62 T 11 ........... GEH2C59AE7E
jpayne@0 63 gi|9626243|ref|NC_001416.1| 63 C 13 ............. 5:;@/C;/=7/=3
jpayne@0 64 gi|9626243|ref|NC_001416.1| 64 T 9 ......... 814AEFA?D
jpayne@0 65 gi|9626243|ref|NC_001416.1| 65 T 11 ........... ?HH7B1::10F
jpayne@0 66 gi|9626243|ref|NC_001416.1| 66 C 7 ....... EB2H304
jpayne@0 67 gi|9626243|ref|NC_001416.1| 67 T 10 ..N....... 9G1E75>B;A
jpayne@0 68 gi|9626243|ref|NC_001416.1| 68 T 8 ........ <F59C09@
jpayne@0 69 gi|9626243|ref|NC_001416.1| 69 C 12 ............ 0:FAG<HH017F
jpayne@0 70 gi|9626243|ref|NC_001416.1| 70 G 10 .........^K. ;/CDED63H9
jpayne@0 71 gi|9626243|ref|NC_001416.1| 71 T 12 ............ AC5GHD3:AE/0
jpayne@0 72 gi|9626243|ref|NC_001416.1| 72 C 9 ......... CE;H76C3.
jpayne@0 73 gi|9626243|ref|NC_001416.1| 73 A 7 ....... ./G5AG5
jpayne@0 74 gi|9626243|ref|NC_001416.1| 74 T 11 ..........^K. 4?<498>/=GC
jpayne@0 75 gi|9626243|ref|NC_001416.1| 75 A 10 .......... =E:=9:A7@=
jpayne@0 76 gi|9626243|ref|NC_001416.1| 76 A 8 ........ HG6>1;.6
jpayne@0 77 gi|9626243|ref|NC_001416.1| 77 C 14 .............. /G>282B5059:9<
jpayne@0 78 gi|9626243|ref|NC_001416.1| 78 T 12 ............ ?5</990?01?G
jpayne@0 79 gi|9626243|ref|NC_001416.1| 79 T 11 .N......... 54B;FG<29.6
jpayne@0 80 gi|9626243|ref|NC_001416.1| 80 A 10 ........^K.^K. ?/3647F@:?
jpayne@0 81 gi|9626243|ref|NC_001416.1| 81 A 11 ........... 42A46/0.04<
jpayne@0 82 gi|9626243|ref|NC_001416.1| 82 T 12 ............ :?A18B31G653
jpayne@0 83 gi|9626243|ref|NC_001416.1| 83 G 8 ........ 83B;FDB@
jpayne@0 84 gi|9626243|ref|NC_001416.1| 84 T 13 ............. AG<HG:4;61/3C
jpayne@0 85 gi|9626243|ref|NC_001416.1| 85 T 14 .............. CB82ACG7;<DA/=
jpayne@0 86 gi|9626243|ref|NC_001416.1| 86 T 13 ............. ==3797D459G5A
jpayne@0 87 gi|9626243|ref|NC_001416.1| 87 T 10 .......... 13.D4?9A01
jpayne@0 88 gi|9626243|ref|NC_001416.1| 88 T 13 ............. @=D::;<BD53@H
jpayne@0 89 gi|9626243|ref|NC_001416.1| 89 A 18 .................^K. :D;0?C9HG?AA1G8;46
jpayne@0 90 gi|9626243|ref|NC_001416.1| 90 T 12 ............ ?;EB:B9;/>9=
jpayne@0 91 gi|9626243|ref|NC_001416.1| 91 T 15 ............... 7/G?850GH;/D604
jpayne@0 92 gi|9626243|ref|NC_001416.1| 92 T 14 .............. 0G:C87AF30::HC
jpayne@0 93 gi|9626243|ref|NC_001416.1| 93 A 13 ...$.......... DA:/==>13B1@;
jpayne@0 94 gi|9626243|ref|NC_001416.1| 94 A 14 .............. :08.D;>C:D1A:G
jpayne@0 95 gi|9626243|ref|NC_001416.1| 95 A 12 ............ F224.A5H.0@/
jpayne@0 96 gi|9626243|ref|NC_001416.1| 96 A 10 .......... ?.F:<1>H1H
jpayne@0 97 gi|9626243|ref|NC_001416.1| 97 T 12 ............ :GHD8D>H=0:3
jpayne@0 98 gi|9626243|ref|NC_001416.1| 98 A 13 ............. 2///A?5C/31@1
jpayne@0 99 gi|9626243|ref|NC_001416.1| 99 C 13 ............. /182E=G>7:.B7
jpayne@0 100 gi|9626243|ref|NC_001416.1| 100 C 10 .......... 60G@F73:A/
jpayne@0 101 gi|9626243|ref|NC_001416.1| 101 C 14 .............. 0=:BA8<=<<6?;5
jpayne@0 102 gi|9626243|ref|NC_001416.1| 102 T 17 ................. C6A0::198H@?4?;5G
jpayne@0 103 gi|9626243|ref|NC_001416.1| 103 C 14 .............. F?H:..F@DD5/;2
jpayne@0 104 gi|9626243|ref|NC_001416.1| 104 T 16 ................ >.5C/6=4/B1E4FG5
jpayne@0 105 gi|9626243|ref|NC_001416.1| 105 G 12 .......N..A. @1GA8AH=DH.B
jpayne@0 106 gi|9626243|ref|NC_001416.1| 106 A 14 .............. D:6F8;C4;@G=D4
jpayne@0 107 gi|9626243|ref|NC_001416.1| 107 A 9 ......... 87=1<6955
jpayne@0 108 gi|9626243|ref|NC_001416.1| 108 A 13 ............. 03FB2<7@4;.<5
jpayne@0 109 gi|9626243|ref|NC_001416.1| 109 A 13 ............. C;8?G55<1F0<?
jpayne@0 110 gi|9626243|ref|NC_001416.1| 110 G 10 .......... ;G5B45?G/.
jpayne@0 111 gi|9626243|ref|NC_001416.1| 111 A 12 ............ B89.<A296=G=
jpayne@0 112 gi|9626243|ref|NC_001416.1| 112 A 14 .............. 848E49B4?HA4B2
jpayne@0 113 gi|9626243|ref|NC_001416.1| 113 A 11 ........... E7/3:D1CG5.
jpayne@0 114 gi|9626243|ref|NC_001416.1| 114 G 12 ............ ?31D.37>4;=7
jpayne@0 115 gi|9626243|ref|NC_001416.1| 115 G 15 ..............^9, 6HD9A8698:?H012
jpayne@0 116 gi|9626243|ref|NC_001416.1| 116 A 12 ..........., F?13AAC7GC92
jpayne@0 117 gi|9626243|ref|NC_001416.1| 117 A 12 ............ 5?EF9HHB35FB
jpayne@0 118 gi|9626243|ref|NC_001416.1| 118 A 13 ............, :/:@<9.D931@9
jpayne@0 119 gi|9626243|ref|NC_001416.1| 119 C 18 .............$...., >5B4<F48C>6H:H8B;D
jpayne@0 120 gi|9626243|ref|NC_001416.1| 120 G 15 N.............. 87HG3;/;>AF76GH
jpayne@0 121 gi|9626243|ref|NC_001416.1| 121 A 14 ............,^K. @H;@18>6:1@E<6
jpayne@0 122 gi|9626243|ref|NC_001416.1| 122 C 16 .............,.. BFE5<C@=;7.;AC06
jpayne@0 123 gi|9626243|ref|NC_001416.1| 123 A 10 .......... 6A044D3496
jpayne@0 124 gi|9626243|ref|NC_001416.1| 124 G 18 .N...........T.,.^K, 4@19E<2H<8HB>79681
jpayne@0 125 gi|9626243|ref|NC_001416.1| 125 G 20 ..................., =C6C:7>1=?5H9:CHA17/
jpayne@0 126 gi|9626243|ref|NC_001416.1| 126 T 13 ..........,., C1:7.9@FDFD62
jpayne@0 127 gi|9626243|ref|NC_001416.1| 127 G 16 .............,,^K, 5H<82B20HEBA@//7
jpayne@0 128 gi|9626243|ref|NC_001416.1| 128 C 13 ............, ?<FC:H5H/1?9F
jpayne@0 129 gi|9626243|ref|NC_001416.1| 129 T 14 ............., /EE.3=6H<H8H<@
jpayne@0 130 gi|9626243|ref|NC_001416.1| 130 G 17 ......$.........,, 1>G=001F=B0A6H0C8
jpayne@0 131 gi|9626243|ref|NC_001416.1| 131 A 17 .N............,,^I, E@A47EC7:?78:?A7@
jpayne@0 132 gi|9626243|ref|NC_001416.1| 132 A 16 ............,.,, 4H3D;7/?A:C;C7H.
jpayne@0 133 gi|9626243|ref|NC_001416.1| 133 A 15 .............,^K. HH>;D0A8.=E.1G8
jpayne@0 134 gi|9626243|ref|NC_001416.1| 134 G 15 .............,. 5F1>6=DDG9.A;8H
jpayne@0 135 gi|9626243|ref|NC_001416.1| 135 C 13 ......,.,,,.^K. :F=<<@.B@..89
jpayne@0 136 gi|9626243|ref|NC_001416.1| 136 G 15 ............,.. 565D3;=A630C2.0
jpayne@0 137 gi|9626243|ref|NC_001416.1| 137 A 20 .......C.....,..,,.. 3A9?@0?H>.4?B@?3CA75
jpayne@0 138 gi|9626243|ref|NC_001416.1| 138 G 15 ...........,,,. 0:15A@4B;>430BE
jpayne@0 139 gi|9626243|ref|NC_001416.1| 139 G 10 ......,.,, 27</.06:6?
jpayne@0 140 gi|9626243|ref|NC_001416.1| 140 C 17 ........N.....,.. BG0<9A5@/;8ABB<C9
jpayne@0 141 gi|9626243|ref|NC_001416.1| 141 T 18 .............N,... .=63HE>0D@H11B:58:
jpayne@0 142 gi|9626243|ref|NC_001416.1| 142 T 17 .....$..N..,..,,.. >A0;0H1<:@A2F96H=
jpayne@0 143 gi|9626243|ref|NC_001416.1| 143 T 15 .........,..,.. F3CDBG9421G0G/>
jpayne@0 144 gi|9626243|ref|NC_001416.1| 144 T 16 .........,..,,.. B?B@F48D>?H.3F1:
jpayne@0 145 gi|9626243|ref|NC_001416.1| 145 T 16 .....N.......,,. 7012;:.B1EB6H.4/
jpayne@0 146 gi|9626243|ref|NC_001416.1| 146 G 15 ........,..,,., H68>C0@8HF8B34:
jpayne@0 147 gi|9626243|ref|NC_001416.1| 147 G 12 .$......,,..n :?0;9<7;80D.
jpayne@0 148 gi|9626243|ref|NC_001416.1| 148 C 20 .............,,...,^8, /F1D.8:A914A2D>2G5F5
jpayne@0 149 gi|9626243|ref|NC_001416.1| 149 C 13 .........,,.. @B3E4AD1<=8BG
jpayne@0 150 gi|9626243|ref|NC_001416.1| 150 T 18 .........,,,...,., EH=G7D9DE277:?G.9B
jpayne@0 151 gi|9626243|ref|NC_001416.1| 151 C 17 ..........,.,,.,. ?:A;B:;2<A2=;A/B7
jpayne@0 152 gi|9626243|ref|NC_001416.1| 152 T 19 .............,,,,., ;@>C.:5@A4G2GA.C6CD
jpayne@0 153 gi|9626243|ref|NC_001416.1| 153 G 16 ...........,,.,. 0<4CG/271G:;33DC
jpayne@0 154 gi|9626243|ref|NC_001416.1| 154 T 15 .......,,,,..,. 4AA1?.5:;;B?EH5
jpayne@0 155 gi|9626243|ref|NC_001416.1| 155 C 14 .......,...,., :73G9:;8C;/052
jpayne@0 156 gi|9626243|ref|NC_001416.1| 156 G 15 ...........,.., .F05CFE:3G:85F/
jpayne@0 157 gi|9626243|ref|NC_001416.1| 157 T 17 ........N,..,,.., 4C071:3:7BE5=G.03
jpayne@0 158 gi|9626243|ref|NC_001416.1| 158 T 17 ........,..,,.... AB07<?E57C>>A;8:8
jpayne@0 159 gi|9626243|ref|NC_001416.1| 159 T 18 ..........$.,,,..,. 7@:2<CA=?7=53.E5<2
jpayne@0 160 gi|9626243|ref|NC_001416.1| 160 C 17 .........,.,,,.., FB4C5F;@:=3619B18
jpayne@0 161 gi|9626243|ref|NC_001416.1| 161 C 18 ........,..,,,.... GB@458=;<G;:8;4AC6
jpayne@0 162 gi|9626243|ref|NC_001416.1| 162 T 16 .........,.,,... <G.=.938:6>>.?66
jpayne@0 163 gi|9626243|ref|NC_001416.1| 163 T 15 ........,.n,.,. .;772D=<D8/8G:2
jpayne@0 164 gi|9626243|ref|NC_001416.1| 164 T 16 .........$,....,, F5.DE<>F.29GF@G3
jpayne@0 165 gi|9626243|ref|NC_001416.1| 165 C 15 ........,.,..,^K, :..DE>5089A:H6A
jpayne@0 166 gi|9626243|ref|NC_001416.1| 166 T 15 .......,.,,..,, FC7C?=.DB6GHA2/
jpayne@0 167 gi|9626243|ref|NC_001416.1| 167 C 16 ......,..,n,.,., BF70.D2?<;9:<B25
jpayne@0 168 gi|9626243|ref|NC_001416.1| 168 T 16 .....,..,,,...,, 9@F@C8H6G:6BHH@B
jpayne@0 169 gi|9626243|ref|NC_001416.1| 169 G 19 ..........,..,,.,., <>G55?C9C983<HB906<
jpayne@0 170 gi|9626243|ref|NC_001416.1| 170 T 14 ..G.....,,,.., 960645/36?:<96
jpayne@0 171 gi|9626243|ref|NC_001416.1| 171 T 17 .....,.,,,....,,^K. 6?2BC3.@23<C31;59
jpayne@0 172 gi|9626243|ref|NC_001416.1| 172 T 15 .....,..,...,,. :/H:8F3:E;5G7F.
jpayne@0 173 gi|9626243|ref|NC_001416.1| 173 T 15 ......,..,,..,, :F5//@AAF723;4C
jpayne@0 174 gi|9626243|ref|NC_001416.1| 174 T 18 .........,.,,...,. 5A.7F8E.5?D5E43:>>
jpayne@0 175 gi|9626243|ref|NC_001416.1| 175 G 19 ......,..,,...n.,,. AE=@:61;E39HAF=C841
jpayne@0 176 gi|9626243|ref|NC_001416.1| 176 T 12 .......$,.,., 14B4BB@3F780
jpayne@0 177 gi|9626243|ref|NC_001416.1| 177 C 18 ........,.,...,,.^K, 6F@65F1@<>5G:<3=99
jpayne@0 178 gi|9626243|ref|NC_001416.1| 178 C 18 ......,..,,..,.,,. 7E738@9=E6@@C=7D:9
jpayne@0 179 gi|9626243|ref|NC_001416.1| 179 G 19 .......,.,..,.,,,,^K. DH3H0@<0H6=::9.<00C
jpayne@0 180 gi|9626243|ref|NC_001416.1| 180 T 21 ........,.,,,..,,,..^K. ==5>:B=58/=/F3EC2?:0E
jpayne@0 181 gi|9626243|ref|NC_001416.1| 181 G 17 .....,$,,.,.,,.,.. 04F7F>B;7?1=C?35F
jpayne@0 182 gi|9626243|ref|NC_001416.1| 182 G 12 ...,,..$.,,.. D1F6<95241F3
jpayne@0 183 gi|9626243|ref|NC_001416.1| 183 A 14 ....,.,,,,.,,. >1=D6<52.>/27<
jpayne@0 184 gi|9626243|ref|NC_001416.1| 184 A 19 .....,,,..,.,,.,,.. D37247BGG3>BG0>1.67
jpayne@0 185 gi|9626243|ref|NC_001416.1| 185 T 21 ......,..,,..,.,,,,.. 6C:EF7633;E?4=H=0@HH=
jpayne@0 186 gi|9626243|ref|NC_001416.1| 186 G 16 .......,..,.,,,. H>7CBA@:35;:A3?G
jpayne@0 187 gi|9626243|ref|NC_001416.1| 187 A 11 .....,,,.,, <.?.B6;=5E2
jpayne@0 188 gi|9626243|ref|NC_001416.1| 188 A 13 ...,..,,.,... A4284B7>?B3BG
jpayne@0 189 gi|9626243|ref|NC_001416.1| 189 C 14 .......,,,,.,, G.D=4.=A5C=G@F
jpayne@0 190 gi|9626243|ref|NC_001416.1| 190 A 18 ......,,.,.,.,..^K.^$, 2</115@;<=A7C@0;B=
jpayne@0 191 gi|9626243|ref|NC_001416.1| 191 A 16 ......,,.,,,,.., D4=9;C2>6EA33<E>
jpayne@0 192 gi|9626243|ref|NC_001416.1| 192 T 21 ........,..,.,,.,,.., 4>64.B6B>;G>1CC/BH=;5
jpayne@0 193 gi|9626243|ref|NC_001416.1| 193 G 14 .....,,..,$.,,. =G>0A7F946E11:
jpayne@0 194 gi|9626243|ref|NC_001416.1| 194 G 18 ...$.....,,..,.,,.. ;5@A@C9=<0BG30;B22
jpayne@0 195 gi|9626243|ref|NC_001416.1| 195 A 16 .......,...,,,.. B2F3D9;A@C0=6GE;
jpayne@0 196 gi|9626243|ref|NC_001416.1| 196 A 14 ......,,....., D3860/;@2BF8>E
jpayne@0 197 gi|9626243|ref|NC_001416.1| 197 G 20 .......$.,,.,.,.,..., H?C0G@8HE7<1A?.<1F?2
jpayne@0 198 gi|9626243|ref|NC_001416.1| 198 T 17 ......,,.,..,,.., :D4.6GE4<4/=@::4>
jpayne@0 199 gi|9626243|ref|NC_001416.1| 199 C 14 ......,..,.,,. =97777?BBFH5:1
jpayne@0 200 gi|9626243|ref|NC_001416.1| 200 A 17 ......,..,.,.,,.. 49BB7ED0E.>1@13=4
jpayne@0 201 gi|9626243|ref|NC_001416.1| 201 A 16 .....,,..,.,,.., B6/C1F2>490D9?00
jpayne@0 202 gi|9626243|ref|NC_001416.1| 202 C 17 .$......,,.,,,,.., ;CE<90959A7H5A57A
jpayne@0 203 gi|9626243|ref|NC_001416.1| 203 A 10 ...,..,.,. 8;D@@EF/AC
jpayne@0 204 gi|9626243|ref|NC_001416.1| 204 A 14 ....,,..,..,.. B/8<59.E.3.B;D
jpayne@0 205 gi|9626243|ref|NC_001416.1| 205 A 13 .N..,,..,...^9, 50D7A25>A1E19
jpayne@0 206 gi|9626243|ref|NC_001416.1| 206 A 13 .....,,,,,.,, AA39296B6GB<2
jpayne@0 207 gi|9626243|ref|NC_001416.1| 207 A 14 ..,..,.,,...,, >;=8@2@<9825=;
jpayne@0 208 gi|9626243|ref|NC_001416.1| 208 G 17 .....,..,,.,..,,^K, C6:0?DEG=48F.>A2/
jpayne@0 209 gi|9626243|ref|NC_001416.1| 209 C 13 .....,.,,..., F./980>2A307;
jpayne@0 210 gi|9626243|ref|NC_001416.1| 210 A 13 ........,,.., HBG6C20CB<=F5
jpayne@0 211 gi|9626243|ref|NC_001416.1| 211 G 16 ....,..,.,,..,,, G9H14.3/:50:G5G?
jpayne@0 212 gi|9626243|ref|NC_001416.1| 212 C 14 .$..,.,.,.,..,, /;=;1D414D43A?
jpayne@0 213 gi|9626243|ref|NC_001416.1| 213 T 17 .......n......,,^K, :@9791:1F>><3AH:9
jpayne@0 214 gi|9626243|ref|NC_001416.1| 214 G 17 ......,..,...,.,, 8H@6C?<587:78G<1<
jpayne@0 215 gi|9626243|ref|NC_001416.1| 215 G 17 ......,.,.,,..,,, 3B>C/5B;B/C.3@DBH
jpayne@0 216 gi|9626243|ref|NC_001416.1| 216 C 18 ....,...,.,,..,.,, 3>2H>4;@6E7B.66A>;
jpayne@0 217 gi|9626243|ref|NC_001416.1| 217 T 18 ....,..,,.,..,.,,, =707/BD/3/5GE@>@C7
jpayne@0 218 gi|9626243|ref|NC_001416.1| 218 G 14 ....,,..,,.,,, B;A;1<G?=H7873
jpayne@0 219 gi|9626243|ref|NC_001416.1| 219 A 18 .....$..,.,,...,,,^K. 93F42H=CB7A85H3/0C
jpayne@0 220 gi|9626243|ref|NC_001416.1| 220 C 15 ..,.,.,,....,,^K, GHGG?E?836BA.D2
jpayne@0 221 gi|9626243|ref|NC_001416.1| 221 A 15 ..,,.,.,....,,, ;A0=D4<?5EDE/90
jpayne@0 222 gi|9626243|ref|NC_001416.1| 222 T 20 .....,,..,...,.,,,., 35D@8BD;4?18>G436GH>
jpayne@0 223 gi|9626243|ref|NC_001416.1| 223 T 21 ....,,.,.,N,...,.,,,. F31/;8C0;;/@0CC@:6=74
jpayne@0 224 gi|9626243|ref|NC_001416.1| 224 T 12 .,,.,,,.,n,, A/;F/:@F<74/
jpayne@0 225 gi|9626243|ref|NC_001416.1| 225 T 13 .....,...,.,, 01;H<9=CA0?H:
jpayne@0 226 gi|9626243|ref|NC_001416.1| 226 C 17 ...,,,,,...,.,,,. 5F:/B//GD/;7AG3=C
jpayne@0 227 gi|9626243|ref|NC_001416.1| 227 G 21 .....,,,.,.,..$,.,,.,. 1<71;G;1.;;3?>947153B
jpayne@0 228 gi|9626243|ref|NC_001416.1| 228 G 23 ......,,.,,.,,..,.,,.,. >1?G;3=7E9@1.@<B44HA8<?
jpayne@0 229 gi|9626243|ref|NC_001416.1| 229 T 14 .....,,.,,,,,, B4<?@.HF58G@1A
jpayne@0 230 gi|9626243|ref|NC_001416.1| 230 G 20 .....,.,.,.,,.,.,,.. B>4F53F<E?=D=F72D6C/
jpayne@0 231 gi|9626243|ref|NC_001416.1| 231 C 17 .....,,,.,.,,,.,. 0.841>/73=G59:2?2
jpayne@0 232 gi|9626243|ref|NC_001416.1| 232 G 17 ...,,.,.,.,.,.,,. H1/;6:73;.7:0BB:2
jpayne@0 233 gi|9626243|ref|NC_001416.1| 233 A 17 ...,,..,.,.,.,,.^K. 3;6?BG@/C:G<DD790
jpayne@0 234 gi|9626243|ref|NC_001416.1| 234 G 18 ....,,.,.,,,.,,.,. B>0:6.;E><>194;.>G
jpayne@0 235 gi|9626243|ref|NC_001416.1| 235 T 13 ....,,,..,,.. :62//.F8@83;8
jpayne@0 236 gi|9626243|ref|NC_001416.1| 236 A 16 ....,,.$,.,,,.,.. =@C1?<:96.?:D.3H
jpayne@0 237 gi|9626243|ref|NC_001416.1| 237 T 18 ...,,,..,,..,,.^K.^K,^K, ;3;A7:.6E1C//0DE=.
jpayne@0 238 gi|9626243|ref|NC_001416.1| 238 C 20 ..$.,,,,.,,.,,.,...,, /84B018B;D?2DA9842<B
jpayne@0 239 gi|9626243|ref|NC_001416.1| 239 C 21 ....,,,..,,..,,.,..,, 11DEAB8@72?2>81AGAE8.
jpayne@0 240 gi|9626243|ref|NC_001416.1| 240 G 18 .......,,..,,.,.., E>45/159A>AA@:.D=;
jpayne@0 241 gi|9626243|ref|NC_001416.1| 241 T 17 .$...,,.,.,..,,,., /49>:GH@70AH@?./6
jpayne@0 242 gi|9626243|ref|NC_001416.1| 242 A 18 ....$,,,,,,,,.,..,, C/321=..E94@>E0;B3
jpayne@0 243 gi|9626243|ref|NC_001416.1| 243 C 17 ..,,,..,,.,,,..,, =1CFA<9>H6/FAA/F=
jpayne@0 244 gi|9626243|ref|NC_001416.1| 244 C 15 .,,.,.,.,,,,.., 62:26>:6@<AD5/4
jpayne@0 245 gi|9626243|ref|NC_001416.1| 245 A 16 .,,,,..,,,.,..., 2><96/F0?/;9H6B.
jpayne@0 246 gi|9626243|ref|NC_001416.1| 246 T 20 ...,,,.,,,.,,.,...,, <<E.HD@43H;E?E1;E>4C
jpayne@0 247 gi|9626243|ref|NC_001416.1| 247 T 15 ..,,,.,...,..,, 5D;4F75?7</2=E>
jpayne@0 248 gi|9626243|ref|NC_001416.1| 248 C 18 ..,,,.,.,.,,.,.,,^K, >/E37EE?>>@A.:=E<5
jpayne@0 249 gi|9626243|ref|NC_001416.1| 249 A 20 ..,.,,,..,,,.,..,,,^K. >5?0E=/@/?99FA@21EEC
jpayne@0 250 gi|9626243|ref|NC_001416.1| 250 G 20 ...,.,.,,.,,...,,,,. FA93H<226932?<3B=<3A
jpayne@0 251 gi|9626243|ref|NC_001416.1| 251 A 17 .,,,,.,,.,,.,..,, 21/17H0A>>/;B.17F
jpayne@0 252 gi|9626243|ref|NC_001416.1| 252 A 19 ...,,,.,..,.,..,,.^K. F02AE/6451@D:=EG.DE
jpayne@0 253 gi|9626243|ref|NC_001416.1| 253 C 22 ..,.,.,..,,.,..,,,,..^K, :21BDCD?>.997BA?8GC5H3
jpayne@0 254 gi|9626243|ref|NC_001416.1| 254 T 23 ..,,,.,.,,.,,,.,..N,.., ;/4FF@6.E.A@;H@5?D:C<45
jpayne@0 255 gi|9626243|ref|NC_001416.1| 255 G 22 ...,,,,.,,.,..,,,,..., ?>93D>E4A>6..FF15?4G2;
jpayne@0 256 gi|9626243|ref|NC_001416.1| 256 G 19 ..,,,..,..,.,.,,.., 503.EB39C/.2H/@0D=G
jpayne@0 257 gi|9626243|ref|NC_001416.1| 257 C 21 ...,,.,..,,,.n..,,,.. @>/2A75C<0D90<@>=<38?
jpayne@0 258 gi|9626243|ref|NC_001416.1| 258 A 17 .,,,,.,..,,,.,,.^K. 74=?;F20=68B78G/5
jpayne@0 259 gi|9626243|ref|NC_001416.1| 259 G 23 ...,,,..,.,,,...,,,,.,. H:F4=89@.C:FF<5G7=D5G0?
jpayne@0 260 gi|9626243|ref|NC_001416.1| 260 G 18 .a.,...,,.,.,,..,. 5DDA332>7CC<=<.8/E
jpayne@0 261 gi|9626243|ref|NC_001416.1| 261 A 12 ..,.,,,.,,.. 5F16887=H35E
jpayne@0 262 gi|9626243|ref|NC_001416.1| 262 A 21 ..,,,.,..,.,...,,..,. @:7G4DA03H0C;E5;F;=2B
jpayne@0 263 gi|9626243|ref|NC_001416.1| 263 C 21 ..,.,,,.,,...,,,..g.. :3;D;>8F<208F4<D/3>?=
jpayne@0 264 gi|9626243|ref|NC_001416.1| 264 A 23 ...,,...,,.,...,,...,.. CF53@D4D1<?E4CA57C463=1
jpayne@0 265 gi|9626243|ref|NC_001416.1| 265 G 20 .,,,.,,,......,,.... H?;.D>2?>0.82F1A..0A
jpayne@0 266 gi|9626243|ref|NC_001416.1| 266 G 25 ...,,,.,,..,,,...,,,,..,. G3@HF1/D3734:6@7A243F;GCC
jpayne@0 267 gi|9626243|ref|NC_001416.1| 267 G 22 ..,,.,,,..,,.,,,...,.. 53>9HD<:.?4;=72AC8A1>A
jpayne@0 268 gi|9626243|ref|NC_001416.1| 268 A 21 ..,,.,,.,,.,..,,,.... 0?914<:B?9<80101A:.C3
jpayne@0 269 gi|9626243|ref|NC_001416.1| 269 A 19 ..,.,.,..,,.N.,,.,. FCAH3;<<:GH<9H1>H2?
jpayne@0 270 gi|9626243|ref|NC_001416.1| 270 T 19 ..,,.,,.,,,..,.,..^K, :A8>295@:44?6510?31
jpayne@0 271 gi|9626243|ref|NC_001416.1| 271 G 20 ..,,,,,,.,..,,,...,, F34>:@3.C4D<0>BA@G//
jpayne@0 272 gi|9626243|ref|NC_001416.1| 272 C 25 ...,,,.,.,,.,...n,,...,.. H.DECD2.8BC4@;/02@=;><501
jpayne@0 273 gi|9626243|ref|NC_001416.1| 273 C 23 ..,,.,,,,.,...,,,..,.., 0BEH4?ED?AB@5.:6B@9AH43
jpayne@0 274 gi|9626243|ref|NC_001416.1| 274 C 18 ..,,.,,,,...,,,.., ;83;@57<EF6;F5/4.0
jpayne@0 275 gi|9626243|ref|NC_001416.1| 275 G 20 ...,..,,,.,..,,..,., ?F.;/8@6B>=?;=E;E;>H
jpayne@0 276 gi|9626243|ref|NC_001416.1| 276 T 17 ..,n..,,,,.,,..,. 2:;.:07H9E;.6:AB/
jpayne@0 277 gi|9626243|ref|NC_001416.1| 277 T 21 .,,.,,,,,..,,,...,.,, E49<00<AAF77/A;:?A?5>
jpayne@0 278 gi|9626243|ref|NC_001416.1| 278 C 22 ..,,.,.,,,,.,.,,,..N., 7@H=2HE1D52;?2?A2A2=E8
jpayne@0 279 gi|9626243|ref|NC_001416.1| 279 T 19 ..,,,,,$.,A,,..,.,,^K, EG:>@.4>H2H5D9C.;.B
jpayne@0 280 gi|9626243|ref|NC_001416.1| 280 G 21 ..,,,.,,.,.,,...,.,,, 7;;8EBC9?C67=CC.493:>
jpayne@0 281 gi|9626243|ref|NC_001416.1| 281 C 15 ,,,.,,...,,..,, 215@HAE4<?;7E31
jpayne@0 282 gi|9626243|ref|NC_001416.1| 282 G 22 ...,,.,.,,,,.,,,.,..,, @5G6C=967/GH@1E:23GG8:
jpayne@0 283 gi|9626243|ref|NC_001416.1| 283 A 22 ..,,,.,,,.,..,,,..,.., AGA5D0?;GE1@7DA<F<G<?8
jpayne@0 284 gi|9626243|ref|NC_001416.1| 284 G 22 ...,,.,.,n..,,.....,,, .26<8A@=45G40C7@?3A5/.
jpayne@0 285 gi|9626243|ref|NC_001416.1| 285 G 18 ...,,.,.,,.,,..,,^K, 7=C2G:8E.;G0<;C5/5
jpayne@0 286 gi|9626243|ref|NC_001416.1| 286 C 20 .,,,.,,,,,.,,...,.., 29C;.5E629@2:5E0;B/E
jpayne@0 287 gi|9626243|ref|NC_001416.1| 287 G 27 ...,,,.,.,,,,,..,,,,,..,,., ?4://DB>FC;0?/=2?7;;3/;555:
jpayne@0 288 gi|9626243|ref|NC_001416.1| 288 G 23 .,,.,.,,,$,..,,,.,.,,,., 7AG0;.C2>9<;<A9<F3E50;=
jpayne@0 289 gi|9626243|ref|NC_001416.1| 289 T 24 ..,,.,.,.,.,,,..,.,,,.,^K. /;:=BF5H>@@339<0BF7.9B.E
jpayne@0 290 gi|9626243|ref|NC_001416.1| 290 G 22 ..,,..,,,.,,,....,,,.. 39D9G4C43>G?EHCE??<8HC
jpayne@0 291 gi|9626243|ref|NC_001416.1| 291 G 22 .,,,,.,,.,..,,...,,,,. G1=5H>9@D?>1:C95D9AFB/
jpayne@0 292 gi|9626243|ref|NC_001416.1| 292 C 20 ..,.,,,.,.,,..,.,,., /C@5C>9HA;09G3:.11BC
jpayne@0 293 gi|9626243|ref|NC_001416.1| 293 A 22 ,,.,.,,.,.,,,...N,,,., 9/GG95.097?CC86<?7:;@4
jpayne@0 294 gi|9626243|ref|NC_001416.1| 294 A 23 ...,.,,,,,.,,,,....,,.. @382C/37C3093:>.26H4>E6
jpayne@0 295 gi|9626243|ref|NC_001416.1| 295 G 23 ...,c,,,.,,,..,..,,,.,N 2>BA@9;/71H..=:0<9=.FD;
jpayne@0 296 gi|9626243|ref|NC_001416.1| 296 G 26 .$.,,.,.,,.,.,,,..,..,,,.,. ;:9?D7.67G.A3;6FFF3.4B<4@=
jpayne@0 297 gi|9626243|ref|NC_001416.1| 297 G 25 ..,n,.,,,.,$,,..,..,,,,.,^K, 6B<52FAG5G@2.H;;9.24A65>/
jpayne@0 298 gi|9626243|ref|NC_001416.1| 298 T 21 ,,.,.,,.,,,.,..,,,.,, :A:A5E.E..A@<>?2F?E?;
jpayne@0 299 gi|9626243|ref|NC_001416.1| 299 A 19 .,,.,.,,,.,..,,.,., @;396<9H;5;177298<:
jpayne@0 300 gi|9626243|ref|NC_001416.1| 300 A 18 .,,,.,,,.,..,.,,., G010<3>8D3018B7.74
jpayne@0 301 gi|9626243|ref|NC_001416.1| 301 T 23 .,.,.,,,,.,,,..,,,,.,,, 188DA858=;>/B;=G=2DA2DD
jpayne@0 302 gi|9626243|ref|NC_001416.1| 302 G 20 ..,,.,.,,,,,..,..,., 1;.@F;=@G/;G6B.E9/=:
jpayne@0 303 gi|9626243|ref|NC_001416.1| 303 A 24 .,,,.,.,,,.,,,.,..,,.,., <:6//23B>8@/5?G.6/A<56H9
jpayne@0 304 gi|9626243|ref|NC_001416.1| 304 G 19 ,,..,,,.,,.,..N,.,. ?;<;=9;</0?10.3F8D?
jpayne@0 305 gi|9626243|ref|NC_001416.1| 305 G 23 .,,.,.,,,..,,$...,.,.,., .F;:;>A45HD:4/98B/9EAE5
jpayne@0 306 gi|9626243|ref|NC_001416.1| 306 T 22 ..,,,,.,,,..,..,,.,.,^K. C2H1;1/EF23@.B6CD9A36E
jpayne@0 307 gi|9626243|ref|NC_001416.1| 307 G 19 ,,..,,..,.,.,,,.,.. 3GDAG<477<28A6FH35.
jpayne@0 308 gi|9626243|ref|NC_001416.1| 308 C 20 a.,,.,,...,.a,.,.,.. 5G@HE=4/2B0=/280C1:8
jpayne@0 309 gi|9626243|ref|NC_001416.1| 309 T 23 .,,.,.,.,.,,,..,,,,.,., :C/G6>==32G<5=;:EE.A@1?
jpayne@0 310 gi|9626243|ref|NC_001416.1| 310 T 25 ,,,.,,,.,.,..,.,,.,,.,.., :0?88G0:9:=:84?3569E<28C0
jpayne@0 311 gi|9626243|ref|NC_001416.1| 311 T 24 .,,.,,,.,.,,..,,.,..,.., ?BG4H/2>7?3G/F@=2E=B558@
jpayne@0 312 gi|9626243|ref|NC_001416.1| 312 A 25 .,,,,,,N,,.N.,,,.,.,.,.., /<<::08H993/;H;06BCBD<43G
jpayne@0 313 gi|9626243|ref|NC_001416.1| 313 T 22 .,,.n,,,.,..,.,,.,.,,^K. 11AB??64EE0F09?<87?9B@
jpayne@0 314 gi|9626243|ref|NC_001416.1| 314 G 22 .,,,.,,,.,..,,.,n.,.,. @AHH0;9E?64>D;4/8@.EB7
jpayne@0 315 gi|9626243|ref|NC_001416.1| 315 A 24 .,,.,.,.,...,,,.,.,,.,^I.^K. 05FG9B4.FE;7.0D??E5/HH6/
jpayne@0 316 gi|9626243|ref|NC_001416.1| 316 C 21 ,,..,,,.,..A,,,..,... 2>F>=AD..??1EC7F16.DG
jpayne@0 317 gi|9626243|ref|NC_001416.1| 317 T 23 ,,,.,,.,.,,,..,n.,.,.,. 1?C=F64314;D3;@=848>9B>
jpayne@0 318 gi|9626243|ref|NC_001416.1| 318 C 20 ,,.,,.,.,.,,.g,..,.. ;H:3CH1;H0?B.G757.6/
jpayne@0 319 gi|9626243|ref|NC_001416.1| 319 T 26 ,.,.,,.,,,.,..,,.,.,.,.... G8AE;18C2/3B0BB05F7>63=?H;
jpayne@0 320 gi|9626243|ref|NC_001416.1| 320 G 21 ,,.,,,,..,..,,,.,.,.. H?<A2=BC0>=FF=CBA..B3
jpayne@0 321 gi|9626243|ref|NC_001416.1| 321 C 23 ,,.,.,,,..,.,..,,.,.,., 3;C:0@@7;09DA6/1=<GEF10
jpayne@0 322 gi|9626243|ref|NC_001416.1| 322 C 24 ,,,.,,,.,N,..,,,,.,...^K.^K. 0.3360HG9;4.38B8A.>B?C7E
jpayne@0 323 gi|9626243|ref|NC_001416.1| 323 G 28 ,.,.,,.n,,.,..,.,.,.,..,.... B2462C53>/7;?A99/6?2094E60F8
jpayne@0 324 gi|9626243|ref|NC_001416.1| 324 C 25 ,,,.,.,,.,.,..,,n.,..,... :F80;16/0=4HA1005.7DGB4<?
jpayne@0 325 gi|9626243|ref|NC_001416.1| 325 C 22 ,,,..,.,,.,.,.,..,,... /BH?3>8.928:A5<0AE>15:
jpayne@0 326 gi|9626243|ref|NC_001416.1| 326 G 26 ,,.,.,,.,,..,.,..,.,..,... C9A>F:9H601>7H4925:GD@1GFD
jpayne@0 327 gi|9626243|ref|NC_001416.1| 327 T 21 ,,..,.,.,..,...,.,... 2>>0=F:B2F?<FB<G5D1A0
jpayne@0 328 gi|9626243|ref|NC_001416.1| 328 C 28 ,,,,,.,.,,.,.,,,.,..,..,.... H@4AH3A;972>FEGH<@7963B141@5
jpayne@0 329 gi|9626243|ref|NC_001416.1| 329 A 27 ,..,,,.,.,..,$,,.,.g.,...... G>540;?@7/=F60=H.4>C53<;3A3
jpayne@0 330 gi|9626243|ref|NC_001416.1| 330 T 23 ,,.,,.,.,.,..,,..,..,.. @80;/1>?@6/9<BF?69A<B?8
jpayne@0 331 gi|9626243|ref|NC_001416.1| 331 A 27 ,,,,.,,.,,..,...,,.,..,.... ?:/3=74A5D8BB1CF9?</=089E<3
jpayne@0 332 gi|9626243|ref|NC_001416.1| 332 A 25 ,,..,,.,.,,,..,,.,.,..,.. :FG>DA=4=5/:7@F<82.A;G45.
jpayne@0 333 gi|9626243|ref|NC_001416.1| 333 A 25 ,,,.,,....,,,.,.,..,..... H>;;@72CE.9:76=6HGEF@1309
jpayne@0 334 gi|9626243|ref|NC_001416.1| 334 A 24 ,,,.n,,.,.,..,N.,,.,.... 8;9824C?29ABB8.<C7.8<2.C
jpayne@0 335 gi|9626243|ref|NC_001416.1| 335 T 25 ,,,..,..,..,,.,.,...,.... 6=@G<G3G/9::GH9C.;;@6EG99
jpayne@0 336 gi|9626243|ref|NC_001416.1| 336 G 26 ,,,.,.,,,,...,.,.,.,,,.... A<HD9HHFC.>:5AD.C?@/3:H?9.
jpayne@0 337 gi|9626243|ref|NC_001416.1| 337 G 27 ,,,,.,,,.,,..,,,.,...,..... 1A?18:@E:A;=:A8ABF2GD.CAG;/
jpayne@0 338 gi|9626243|ref|NC_001416.1| 338 T 27 ,.,.,,.,,.,..,..,...,.....^K. D7980H=G.A2GGHBB<H.;@@DG@5A
jpayne@0 339 gi|9626243|ref|NC_001416.1| 339 A 24 ,,.,,,,.,..,..,.,..,...^K. =73BG:E87;35<AE>G0513@B5
jpayne@0 340 gi|9626243|ref|NC_001416.1| 340 T 18 ,,.,,.,N..,.,.,... 92A7/>BB?DFA.F.7D7
jpayne@0 341 gi|9626243|ref|NC_001416.1| 341 G 26 ,..,,,,,..,.,,..,.,,...... ;1351B48BF9>C?36B?.=D1.F/C
jpayne@0 342 gi|9626243|ref|NC_001416.1| 342 C 23 ,,,,.,,.,.,,....,...... DH.<3E8E310E3/<6?.H5/:4
jpayne@0 343 gi|9626243|ref|NC_001416.1| 343 C 24 ,,.,.,...,.,,.,,.......^K, 8//EF4113./>83<>B4DE2A8;
jpayne@0 344 gi|9626243|ref|NC_001416.1| 344 G 30 ,,,,.,.,..,..,,..,...,......., <7F//.:EC9H?<2<87A8.:40D13;D1<
jpayne@0 345 gi|9626243|ref|NC_001416.1| 345 A 29 ,,,.,,.,.,,..,.,..,,..,...... >;=D>2F7C<C>4;HF3F/@0:/7B6GE:
jpayne@0 346 gi|9626243|ref|NC_001416.1| 346 A 25 ,,.,..,..,..,..,,......., C5;B170D9.EFB0F.13FG1A9<6
jpayne@0 347 gi|9626243|ref|NC_001416.1| 347 A 22 ,,,,.,...,,..,......., CD==56@@;/4E4?7>09B@H4
jpayne@0 348 gi|9626243|ref|NC_001416.1| 348 G 29 ,,,,,,,.,,..,..,,.,..,.....,^K, @;;HFD<E3.1.@7.9??FA766?051:/
jpayne@0 349 gi|9626243|ref|NC_001416.1| 349 G 24 ,n,,.,.,,.,.,,........., :1B7EA81=;:728:8<90==9B/
jpayne@0 350 gi|9626243|ref|NC_001416.1| 350 G 31 ,,,,,,,.,.,,....,,..,.,......,^K, HB@AAB9A@28.32775D<2F3>2H:15C/9
jpayne@0 351 gi|9626243|ref|NC_001416.1| 351 A 25 ,,,.,,..,$.,.....,...,,.c^K. 3124465844/5B7//<B8:2/.7<
jpayne@0 352 gi|9626243|ref|NC_001416.1| 352 T 19 ,,,.....,..,...,g,. :99==7?2D2G=4;93/?0
jpayne@0 353 gi|9626243|ref|NC_001416.1| 353 G 28 ,,,.,,,..,...,,..,.,.N....,. C242GB80A8/1>.170=9F5/53HGCD
jpayne@0 354 gi|9626243|ref|NC_001416.1| 354 C 33 ,,g.,,,.,...,..,..,.,..,......,.. =89978A>0@?F701D4>D5@.9H<@;H>;/C?
jpayne@0 355 gi|9626243|ref|NC_001416.1| 355 T 27 ,,.,,.,..$.,..,,.,......,... E9<<?6C4EE71D@;A:BD?6=HD;/1
jpayne@0 356 gi|9626243|ref|NC_001416.1| 356 G 26 ,,.,.,.,.,..n.,..,.....,,. 7C4>/@4@DF10?38AE<D?@74B?:
jpayne@0 357 gi|9626243|ref|NC_001416.1| 357 A 26 ,,,.,,.,.$.,,.,.,......,,., >=2<EDE=>54@E?5@?1H9D6/?>A
jpayne@0 358 gi|9626243|ref|NC_001416.1| 358 A 25 ,,,.,..,.,...,..,...,.,., C/;AGCFE84GE4G=;424@G9591
jpayne@0 359 gi|9626243|ref|NC_001416.1| 359 A 30 ,,,.,,,,.,..,,.,.,..,.....,.,. 3D34D<H7=28?//.;02=?H.D5D?C6@1
jpayne@0 360 gi|9626243|ref|NC_001416.1| 360 T 19 ,,,,..,,.,.,...,,., 9?B=:E84;;./@/1;5G9
jpayne@0 361 gi|9626243|ref|NC_001416.1| 361 T 24 ,,,.,,,.,.,,......,.,.,^K. =?6E7?1/DD<GH@6?<034=A?E
jpayne@0 362 gi|9626243|ref|NC_001416.1| 362 G 26 ,,.,,,.,..,,.,.,..$....,.,. ?2>?E6.=G@@69>575D8C<A>>7@
jpayne@0 363 gi|9626243|ref|NC_001416.1| 363 A 27 ,,,.,,.,,.,..,,.,,....,.,.^K, A98.6@?;4??D.7;=@496FC=/><;
jpayne@0 364 gi|9626243|ref|NC_001416.1| 364 G 26 ,.,,.,,.,..,..,t....,.,.,. HC45B@D/=559;?5>/=?<;2B=HD
jpayne@0 365 gi|9626243|ref|NC_001416.1| 365 A 27 ,,,,.,,..,,.,,..,......,.,, 9;>>4DD9F9AG0EE334.4>;=@/C;
jpayne@0 366 gi|9626243|ref|NC_001416.1| 366 A 21 ,,,.,.,...,..,.,.,.,, 28?><G:/<?.=10=6B>8AE
jpayne@0 367 gi|9626243|ref|NC_001416.1| 367 C 28 ,.,,,,.,..,..,,.,...,..,..^K.^K, ==@0@2@DGGA8CA774H=?3/95/?>?
jpayne@0 368 gi|9626243|ref|NC_001416.1| 368 G 27 ,.,,,..,..,..,...,..,.,.,., AG/8;./2B<8<036.E/1<HC61C7E
jpayne@0 369 gi|9626243|ref|NC_001416.1| 369 A 29 .,,.,,..,n.,.N....,.,.,.,.,., GG6>A29:@/G;57AH@G2:<;>F8B::;
jpayne@0 370 gi|9626243|ref|NC_001416.1| 370 A 32 ,,.,,,n.,..,,..,,..,....,.,n.,,, 0;4H>B21DH8:6AAH34=62<02DG319=?G
jpayne@0 371 gi|9626243|ref|NC_001416.1| 371 A 30 ,,,,,.$,,.,..,.,..,....,.,.,,,, 1=6@;/=/@94B91:1BAH9?8C=318ADE
jpayne@0 372 gi|9626243|ref|NC_001416.1| 372 A 25 ,,,,.,.,..,.,.,....,.,.,, CG<150:</8>/84A0?@A/06D=7
jpayne@0 373 gi|9626243|ref|NC_001416.1| 373 G 19 ,,.,,$...,..,....... ;@9.2C6:3A;EC=58379
jpayne@0 374 gi|9626243|ref|NC_001416.1| 374 C 23 ,.,,,.,...,....,.,.,,,A 2B85F<.@332=EGA@=49??.0
jpayne@0 375 gi|9626243|ref|NC_001416.1| 375 T 28 ,,,,,.,,.$,...,$...G,.,..,,.,. G=DE5>=95HF6/E/@.A78DGG5F3<A
jpayne@0 376 gi|9626243|ref|NC_001416.1| 376 G 22 ,.,,,..,T.....,..,.,., ::6ED05D.><GHD.5B9F2H.
jpayne@0 377 gi|9626243|ref|NC_001416.1| 377 C 25 ,,.,,.,..$.,.,....,..,.,., F7/D@0/A00<.E:2A<>>8<DE8E
jpayne@0 378 gi|9626243|ref|NC_001416.1| 378 G 25 ,.,,.,,.,.,......,.N,,,,. FC?/F<3.@C7BD0.9H4<>?78A7
jpayne@0 379 gi|9626243|ref|NC_001416.1| 379 C 23 ,,.,,,,.,......,.,.,.,. H?;?CGF8.>5<4A/:B@.;@4E
jpayne@0 380 gi|9626243|ref|NC_001416.1| 380 C 24 ,,,.,,,.,.,.....,,G,,.., 51CF/=6B=.0:/8DD@?4D2/:H
jpayne@0 381 gi|9626243|ref|NC_001416.1| 381 G 27 ,,.,,,.,..,.,......,.,,,.,. 678EHB5>187GH4=1DH8F0G3>EA4
jpayne@0 382 gi|9626243|ref|NC_001416.1| 382 G 27 ,,.,,.,,..,.....,..c.,,.,.^K. .CE.3F.F5CH<?/A205BGE;65<:>
jpayne@0 383 gi|9626243|ref|NC_001416.1| 383 G 27 ,.,$,,.,.,.......,..,.,,.,.. @>8@/??F@C?D3>?6FA3A91HHF@6
jpayne@0 384 gi|9626243|ref|NC_001416.1| 384 A 17 .,..,,.....,..,.. 0F81G0D082;:>;77/
jpayne@0 385 gi|9626243|ref|NC_001416.1| 385 G 26 ,,.,,.$,,.,...$..,.,.,,.,... ;A;>1>E:E<G48E0E551:922<.6
jpayne@0 386 gi|9626243|ref|NC_001416.1| 386 G 22 ,,.,,,,.,....,...,.... 1/G5?D5:67H@4A6606:?A.
jpayne@0 387 gi|9626243|ref|NC_001416.1| 387 T 25 ,.,.,,,.,......,.,.,....^K. ?@0GE832:040:3;68DA3C0.@8
jpayne@0 388 gi|9626243|ref|NC_001416.1| 388 T 23 .,,.,$,.,.,..,..,..,.,.. E=.//5AA?815C>/<8/F>6;1
jpayne@0 389 gi|9626243|ref|NC_001416.1| 389 G 21 ,,.,,.,......,.,.,... 7>C:2C<@C1:9=@8EG@4;F
jpayne@0 390 gi|9626243|ref|NC_001416.1| 390 A 22 ,,,,.,,.,....,.,,..,.. 3.;?6D.9>B90=..91/H641
jpayne@0 391 gi|9626243|ref|NC_001416.1| 391 A 23 ,,,,.$,,.....,,.,...,... ;>=4AH490B9?=653A=;F4@6
jpayne@0 392 gi|9626243|ref|NC_001416.1| 392 G 22 ,$.,,,,,....,.,..,.,... =G;11H>>FBH96G>9<@30F6
jpayne@0 393 gi|9626243|ref|NC_001416.1| 393 A 21 ,.,,.,,...,..,,..,... :6>F9A.8E04=45/>A>312
jpayne@0 394 gi|9626243|ref|NC_001416.1| 394 A 18 ,.,,.,.,.....,,,.. 1>?8F227G;?3>8F;8C
jpayne@0 395 gi|9626243|ref|NC_001416.1| 395 C 19 ,.,.,,$,...,.,.,.a,. /<45H?H?:;?B4:2@?H:
jpayne@0 396 gi|9626243|ref|NC_001416.1| 396 T 18 ,.,.,n......,.,... 0G10503>G19D0B0>42
jpayne@0 397 gi|9626243|ref|NC_001416.1| 397 G 18 ,c.,.,....,.,,.,,. 1=HE:<D94EFF1533@3
jpayne@0 398 gi|9626243|ref|NC_001416.1| 398 C 18 .,,....,.,.,,.,... 7G36ADHE<A?0<.EC/7
jpayne@0 399 gi|9626243|ref|NC_001416.1| 399 G 19 .,,.,,,......,,,,N. .GH10.8??46A:2?40>/
jpayne@0 400 gi|9626243|ref|NC_001416.1| 400 G 19 ,,.,,,....,n.,.,.,. =D88310><9;7082HG//
jpayne@0 401 gi|9626243|ref|NC_001416.1| 401 C 20 .,..,....,.,...,,... 16B2B<6<C7F37F>7@@83
jpayne@0 402 gi|9626243|ref|NC_001416.1| 402 A 19 ,,.,,.,...,.,,..... E1G2EG560=;;HG929;B
jpayne@0 403 gi|9626243|ref|NC_001416.1| 403 G 15 .,.,.....,.,... 72?HD<4E2:3A<B3
jpayne@0 404 gi|9626243|ref|NC_001416.1| 404 G 18 ,,.,....,.,.,,.,.. .:@8CGDA02.=;GGA4?
jpayne@0 405 gi|9626243|ref|NC_001416.1| 405 C 18 ,,.,....,.,..,,.N. 89AAE2.5E2</7636/5
jpayne@0 406 gi|9626243|ref|NC_001416.1| 406 C 14 .,,.....,,..,^K. H/@.<660/4G@H7
jpayne@0 407 gi|9626243|ref|NC_001416.1| 407 A 18 .,,.,...,.,,,.,.,. ;E<>A1:H.06F0@@@04
jpayne@0 408 gi|9626243|ref|NC_001416.1| 408 G 19 .,..,....,,,.,,.,.. 1A9F5<?CF3?@CCC21;C
jpayne@0 409 gi|9626243|ref|NC_001416.1| 409 C 23 .,,.,...,.,.,.,.,.,...^K. 3A>G1//01A?/035/CE=.=?.
jpayne@0 410 gi|9626243|ref|NC_001416.1| 410 G 14 .,.,.n,,,.,... ?C>=>:@B=<A8/G
jpayne@0 411 gi|9626243|ref|NC_001416.1| 411 A 18 .,,.....,.,.,..... =//A>F76HA105CG?7.
jpayne@0 412 gi|9626243|ref|NC_001416.1| 412 G 16 .,.,...,...,..., .;9HCF.C6H474:A8
jpayne@0 413 gi|9626243|ref|NC_001416.1| 413 G 19 ,.,,..,,..,.,.,..., DHH=6.2G;E549>.ED.@
jpayne@0 414 gi|9626243|ref|NC_001416.1| 414 C 18 ,.,.,...,,,......, :=A<HG02D@D@554589
jpayne@0 415 gi|9626243|ref|NC_001416.1| 415 A 18 .,.,,.,.,.,,....., GF:2.?@6/36<;B/B>8
jpayne@0 416 gi|9626243|ref|NC_001416.1| 416 G 19 ..,...,.,N.,.,...,^K. 8;94E;1<.2@;69068<5
jpayne@0 417 gi|9626243|ref|NC_001416.1| 417 A 15 .,,.,...,,,,.,. G?A/<<H:./:F2G8
jpayne@0 418 gi|9626243|ref|NC_001416.1| 418 T 20 .,,.,...,.,.,,....,. CC/E4@>EE118A8958D5F
jpayne@0 419 gi|9626243|ref|NC_001416.1| 419 C 21 ..,,.,....,,,.,....,. ?;>7AH0H?4/0E1C?4BF=7
jpayne@0 420 gi|9626243|ref|NC_001416.1| 420 T 20 ,.,,,..,.,,.,,....,. 945;H9?63.3>8ABH:@3?
jpayne@0 421 gi|9626243|ref|NC_001416.1| 421 C 21 ,,.,..,..,,.,......,. F5C3HE?2DE9;>=:;422<@
jpayne@0 422 gi|9626243|ref|NC_001416.1| 422 C 21 ..,...,.,,,.,.,....,. 8;97A8.?@:.AE:97.BB:F
jpayne@0 423 gi|9626243|ref|NC_001416.1| 423 A 15 .,.t...,,,,.... AHC61@4.9DF6=CE
jpayne@0 424 gi|9626243|ref|NC_001416.1| 424 G 19 .,.,.,..,,,......,. >EE<GC8=993/=:38?G3
jpayne@0 425 gi|9626243|ref|NC_001416.1| 425 C 16 ,.,.,...,.,...., A1@2G8:882/F3F;?
jpayne@0 426 gi|9626243|ref|NC_001416.1| 426 C 16 ,,.,..,.,,.,,... =E;;B>FA96C:0@.;
jpayne@0 427 gi|9626243|ref|NC_001416.1| 427 A 15 ...,,,,,.,..... 724H<HDH>;F=G.?
jpayne@0 428 gi|9626243|ref|NC_001416.1| 428 G 15 .,$..$,..,,,..... 4>A>;:/G2;2E/G0
jpayne@0 429 gi|9626243|ref|NC_001416.1| 429 G 17 .,...,.,,,....... 3.4:?A83HD:3ED1.2
jpayne@0 430 gi|9626243|ref|NC_001416.1| 430 A 12 ,..,,,...,,^K, =6@<G9AE8015
jpayne@0 431 gi|9626243|ref|NC_001416.1| 431 A 16 ,..,.,,.,...,.., 0HH@;6?F1740/EC7
jpayne@0 432 gi|9626243|ref|NC_001416.1| 432 C 16 ...,,.,....,..,, ?089G962@=:6G..5
jpayne@0 433 gi|9626243|ref|NC_001416.1| 433 T 21 ..,...,,$.,,.,......,, 6@/07FECGB?A<H0C;=4..
jpayne@0 434 gi|9626243|ref|NC_001416.1| 434 A 10 ..,,,...., 2E9?</H43.
jpayne@0 435 gi|9626243|ref|NC_001416.1| 435 T 20 ..,....,.,,,...,..,, 64H=83F.=B;D/3/7@;C;
jpayne@0 436 gi|9626243|ref|NC_001416.1| 436 T 23 ..,.....,,,.,.....,..,, <91E2H255A4.2@4>4CA8G5E
jpayne@0 437 gi|9626243|ref|NC_001416.1| 437 G 19 ..,...,.,,,.,...,., BDA<CF8=:?232624E<8
jpayne@0 438 gi|9626243|ref|NC_001416.1| 438 A 16 .,....,,,.,...., 52D8=F80GD@/=?<6
jpayne@0 439 gi|9626243|ref|NC_001416.1| 439 G 15 .,...,,,......, H:HG5@8EFD27HD1
jpayne@0 440 gi|9626243|ref|NC_001416.1| 440 T 17 .,...,,,.....,.., 9A0?<:ACG3F4?.EG@
jpayne@0 441 gi|9626243|ref|NC_001416.1| 441 A 17 ..,..,.$,.t.....,C @5=11C>=HD63.8>2?
jpayne@0 442 gi|9626243|ref|NC_001416.1| 442 C 14 ,..,,....,,,,^K, B38:D:46AAC570
jpayne@0 443 gi|9626243|ref|NC_001416.1| 443 G 16 N,...,,,.,..,.,, B70:0DFEF57@DB49
jpayne@0 444 gi|9626243|ref|NC_001416.1| 444 A 20 .,...,,,.....,..,,,, 467726C9857H0<E4>C54
jpayne@0 445 gi|9626243|ref|NC_001416.1| 445 A 17 ..,...,,,.,...,n^K. 07@@HF?>949860:.@
jpayne@0 446 gi|9626243|ref|NC_001416.1| 446 C 21 .....,,.,....,..,,,,. 7?F?014==7:F3>>36;97A
jpayne@0 447 gi|9626243|ref|NC_001416.1| 447 G 19 ..,,,.,.....,,,,..^K, 2A9B07>/FB6C123?/50
jpayne@0 448 gi|9626243|ref|NC_001416.1| 448 C 22 ..,.,,.,...,..,,,,,T., 5?9=05CF0@/=9D/EF;4@9G
jpayne@0 449 gi|9626243|ref|NC_001416.1| 449 C 21 .,.,.,.......,,,,,.,^K. D9EB.E=D9;F150;H@:2E?
jpayne@0 450 gi|9626243|ref|NC_001416.1| 450 A 18 ,..,.,......N,,,,^K. ;<9:GA8H.3.B1<4GH8
jpayne@0 451 gi|9626243|ref|NC_001416.1| 451 T 23 ...,,,.,....,.,,,,.,..^K, 74:<1<7DD705H:78/B453A0
jpayne@0 452 gi|9626243|ref|NC_001416.1| 452 C 15 ...$.,,.,.,,a.., G2B70?4>@?BF.D>
jpayne@0 453 gi|9626243|ref|NC_001416.1| 453 G 24 .,.,,,n.,$.....,,,,...,,, 7B>?FH>>79<D@;0H9041D=F7
jpayne@0 454 gi|9626243|ref|NC_001416.1| 454 A 24 ...,...,N.,,,,,..,,.,,,^K, G@:GG<C?:A1/<D5GE5=<9CC2
jpayne@0 455 gi|9626243|ref|NC_001416.1| 455 C 23 .,.,n,,.....,..,,.,..,, D?FC3F84EF76?<8FEF?4/;A
jpayne@0 456 gi|9626243|ref|NC_001416.1| 456 T 20 ..,..,,,....,,,N,.,, >5A>7/D1.E86HC<G@DHE
jpayne@0 457 gi|9626243|ref|NC_001416.1| 457 T 24 ..,.,,,,...,,,,,.,,.,,,, 2B?82=51;EF6G>0876=.G:>.
jpayne@0 458 gi|9626243|ref|NC_001416.1| 458 A 26 ....,,......,..,,,.,..,,,^K, 0<13@9F82/261::2CFC8;41;13
jpayne@0 459 gi|9626243|ref|NC_001416.1| 459 C 26 .,.,,,......n,,,,..,..,,., 8?77G.25@9506:1H;7@E<EG/D4
jpayne@0 460 gi|9626243|ref|NC_001416.1| 460 G 23 .,.,n,......,,,,..,,,., /C3@1?3?G2>:F@D@E>7/52@
jpayne@0 461 gi|9626243|ref|NC_001416.1| 461 C 23 ..,,,,....,..,,,,.,.,,. D=>C>C0@;>E9>8;H298.G;F
jpayne@0 462 gi|9626243|ref|NC_001416.1| 462 G 21 .,.,.....,.,,,..,,,.^K, /19EG:0/F?C91;80==;.E
jpayne@0 463 gi|9626243|ref|NC_001416.1| 463 T 22 N,.,.....,,,,...,,.,,, DF<3DH9@4D6<7A1.B>FDD.
jpayne@0 464 gi|9626243|ref|NC_001416.1| 464 G 25 ..,,,,...,..,,,a..,,,,,,, 2F6:/8H<2C6EG<7??43=9??0@
jpayne@0 465 gi|9626243|ref|NC_001416.1| 465 C 24 ,..,,,...,..,,,.,..,,,,, 2?HE@.?=@GG.>C@@<H6525:2
jpayne@0 466 gi|9626243|ref|NC_001416.1| 466 G 26 ....,,,,......,,,n.,.,,,,, @=;C63:879;.:9H9C1EA:>0=>;
jpayne@0 467 gi|9626243|ref|NC_001416.1| 467 C 27 .,.,,,G...,.,,,..,..,,,,.,^K. 8G;C0@?C50E50B@H;3C005H8C34
jpayne@0 468 gi|9626243|ref|NC_001416.1| 468 A 20 .,.,,.N.,,,..,,.,,,, C.D2H.;7@C<7176G4E?5
jpayne@0 469 gi|9626243|ref|NC_001416.1| 469 G 24 ..,..,...,.,,,,..,,,,,.^K. ..6:1968;788<H4;D;=624E5
jpayne@0 470 gi|9626243|ref|NC_001416.1| 470 G 28 ..,.,,,.....,.,,..,.,,,.,,.. 1=>EH07@E85347/5EEE:7/>A@>BD
jpayne@0 471 gi|9626243|ref|NC_001416.1| 471 C 26 .,.,,..,.,,n.,,.,,,.,,,..^K. .8>4>9.573E31;@;D;0<4CC672
jpayne@0 472 gi|9626243|ref|NC_001416.1| 472 C 22 .,,,...,.,,.,,.,,,,... ..HE;1BHE@A34=;H<=?570
jpayne@0 473 gi|9626243|ref|NC_001416.1| 473 G 22 .,.,,C...,,,,...,,,,,, A7<D8:7/>1C64DCF81?0H<
jpayne@0 474 gi|9626243|ref|NC_001416.1| 474 A 22 ,,,,....,.,,.,.,,.,,.. :;@2E?00>@:57C?F7<9:H=
jpayne@0 475 gi|9626243|ref|NC_001416.1| 475 C 28 .,,,,,.....,,,,.,..,,,.,,..^K. H@6;;FB5H25..@<4=B0?.<<.B7:?
jpayne@0 476 gi|9626243|ref|NC_001416.1| 476 G 26 ..,,,$,...$,nC.,,..,n.,,,... G/.9DH24DE<;<HBH/G1;AEF9=6
jpayne@0 477 gi|9626243|ref|NC_001416.1| 477 C 24 ..,.,.$..,,,,,..,,,.,,..^K, 5<<FEC1B?331?1HC>2DC;5.4
jpayne@0 478 gi|9626243|ref|NC_001416.1| 478 A 16 .,,,.,.,,,.,,.., ;D>0>H358G<?E<@1
jpayne@0 479 gi|9626243|ref|NC_001416.1| 479 C 27 ...,,.,.,,,.,.,,,,.,,...,^K.^K. GED?C/DB<?:>17/C;C:80/C/<91
jpayne@0 480 gi|9626243|ref|NC_001416.1| 480 A 22 .,.,,,,..,.,,,.,,,.,.. 1FHA6BDHC:;AH@C3FB====
jpayne@0 481 gi|9626243|ref|NC_001416.1| 481 G 29 ..,,..,.,,,,,.,,..,,.,,....T. 38/37<203=19=E7C6G<??96<.;9=/
jpayne@0 482 gi|9626243|ref|NC_001416.1| 482 G 23 ..,,,..,.,,,,.,,.,,..,. ;0<95H:19:?<?@=740/8.2?
jpayne@0 483 gi|9626243|ref|NC_001416.1| 483 A 33 ..,,,...,,,,..,,..,,.,,,....,...^K. G.0HGB3D<<5590D691<7F?>7H8E;36?6:
jpayne@0 484 gi|9626243|ref|NC_001416.1| 484 A 27 ..,,,.,.,,...,,,,.,,....,.. 9<7>764FGHH@=5;/D:H8D?20CG?
jpayne@0 485 gi|9626243|ref|NC_001416.1| 485 C 27 .,,,..,,,t,..,,,,,.,,.,...^K. C??183>GAF>072A981DD16;B>4:
jpayne@0 486 gi|9626243|ref|NC_001416.1| 486 T 31 .,,..,.,,,..,,N,,,.,....,..,.^K,^K, 36<39<G@..6;44:CBF7C97HG>:A<6E;
jpayne@0 487 gi|9626243|ref|NC_001416.1| 487 G 29 ..,.,,,,,..,..,.,...,..,..,,^K. 9B/=@4C3=1B3762;6@=0EE74<.A3A
jpayne@0 488 gi|9626243|ref|NC_001416.1| 488 A 28 ..,,..,,,,,,,..,,,......,... /6434H?71BGG/@2HHF6AH6<;:DG9
jpayne@0 489 gi|9626243|ref|NC_001416.1| 489 A 36 ..,,,..,.,,,,.,,.,,.,,,...,.....,,.^K. @G1>5254H:>60@0CF=<D3<A6FD/E/F@<B>1<
jpayne@0 490 gi|9626243|ref|NC_001416.1| 490 G 30 ,,,...,,,,,..,,,.,,...,..,.,.^K. C6@:H@FA484D=82>1.ADG4D:=C9?C?
jpayne@0 491 gi|9626243|ref|NC_001416.1| 491 A 34 ..,,..,.,,,..,,.,,,.,,,...,..,.... 80FH08;.:007:1D82@@40222.4/DB.G25<
jpayne@0 492 gi|9626243|ref|NC_001416.1| 492 A 37 .,,,...,.,,g,.,,.,,.,,,....,....,,... 18>D5.@2F7?212652482C.;/;<<DGH=:21B5/
jpayne@0 493 gi|9626243|ref|NC_001416.1| 493 T 33 ..,,,..,.,,,.,,.,,,,...,...,.,... ;@77>H=6?<0=90259?F8.:DE5CA3HA>1<
jpayne@0 494 gi|9626243|ref|NC_001416.1| 494 G 30 .,,.,,,,,,.n..,,.,,.......,... <5C;=A29=B65?8<61;=>B54?G?76F9
jpayne@0 495 gi|9626243|ref|NC_001416.1| 495 C 29 .,,..,.,,.,,.,,.,,.....,,.... E4HC@.4B>0;F1>>6=8E8/690E2G?2
jpayne@0 496 gi|9626243|ref|NC_001416.1| 496 C 38 ..,,,..,.,,,,.,,..,.,,,..,...,...,.... 2G9AC4@E.G0<GH1=C6:D<E@3H5G1<=:5.8<H>G
jpayne@0 497 gi|9626243|ref|NC_001416.1| 497 A 28 .,,,..,.,,...,,,......G,,... E2B:38D56;64D.7C1AHDD/::@>9>
jpayne@0 498 gi|9626243|ref|NC_001416.1| 498 G 27 .,,...,,.,,.,,,,,......n,.^K. 4<<9<29EH3E7G.7GDC?0E0D:GB.
jpayne@0 499 gi|9626243|ref|NC_001416.1| 499 A 28 ..,.,,,,,..,,,,....,....,,.. .B<<=;D>FA6@F>312>DBG85571?>
jpayne@0 500 gi|9626243|ref|NC_001416.1| 500 G 30 ..,...,,,,.,,...,,....,..,.... 81H04<D15005.408A34DFB.A>E0C=1
jpayne@0 501 gi|9626243|ref|NC_001416.1| 501 A 31 ..,,..,,,,,.,,..,,,..,...,,,... GG9<=C3?BH.218D.4:GCA730:57=90D
jpayne@0 502 gi|9626243|ref|NC_001416.1| 502 C 33 .,,,..$,,,.,,..,,.,,...,..,...,,.. ?G72FA:>?><14<4D@0F04<GD<2HBF<:50
jpayne@0 503 gi|9626243|ref|NC_001416.1| 503 T 30 .,,,.,.,,,,,.N,...,....,,....^K, G28HA2/B8;13:83DB?95>H8GD3.:;7
jpayne@0 504 gi|9626243|ref|NC_001416.1| 504 C 31 ..,.,.,,,N,.,,,.....,...,,....t 86;@B455/<.CC8D.=5537C:A0;5??E7
jpayne@0 505 gi|9626243|ref|NC_001416.1| 505 C 31 ..,..,.,,,,.,,..,,.,,,....,,..^K. 17<26F6A3A<HE2:GFE0.3?4G36:DE/>
jpayne@0 506 gi|9626243|ref|NC_001416.1| 506 G 31 .,..,.,,,.,,..,,,,.....,,....,. B1AD88:?6/36A0.4>E697=?:>>3E=7A
jpayne@0 507 gi|9626243|ref|NC_001416.1| 507 C 37 ..,,,..,.,,,,.,..,,.,........,,....,. B@7@4.3<CB5>5G;3518=5FFHCH:</8=1HH><H
jpayne@0 508 gi|9626243|ref|NC_001416.1| 508 T 28 .,,..,,,,,..,,,,...,....,,.. A;..A7/;598E:9F00:72:97;5.=1
jpayne@0 509 gi|9626243|ref|NC_001416.1| 509 G 25 .,n.,,.,.,.....,.,,...... 7/G.@D;7CG54>H>9.G=9>B2<=
jpayne@0 510 gi|9626243|ref|NC_001416.1| 510 A 36 .,,..,,,,,.,,..,,.,...,...,..,...,.^K. 7F8.;55H?238?E7.0890B=9;7=>BF8HE23>=
jpayne@0 511 gi|9626243|ref|NC_001416.1| 511 A 29 .,,,..,N,,..,,.,,.,...,...,.. E3C3.B8:B29D524<.AEF8.D9DC87@
jpayne@0 512 gi|9626243|ref|NC_001416.1| 512 G 27 ,..$.,,,,...,,..,.,...,..... 90=/>81?.>5:>9>22F/?@E35F@2
jpayne@0 513 gi|9626243|ref|NC_001416.1| 513 T 34 ..,..,,,,.,,..,.,,..,...,.,,...,.. CHA523<373=9.1<@<BD:4@ED0@774G1D9?
jpayne@0 514 gi|9626243|ref|NC_001416.1| 514 G 27 ,,.,.,.,,..,,.,....,....,,. >=09356G4=3;.<01?=C5;1C7GD<
jpayne@0 515 gi|9626243|ref|NC_001416.1| 515 G 30 .,,,.,,,,.,,,,.,...,....,...,. 0;8DEF:G5D?.45</005D32.DB370;5
jpayne@0 516 gi|9626243|ref|NC_001416.1| 516 T 32 .,,,.,,,,.,..,.,..,....,.....,.. 3/=G3>0E5C0HDC0@DH;G;;.D6;7;/<5B
jpayne@0 517 gi|9626243|ref|NC_001416.1| 517 G 24 .,.,,,.,.,.,...,...,,... A.B88B;..C:/?/;3C1E1<49C
jpayne@0 518 gi|9626243|ref|NC_001416.1| 518 G 32 ..,,N,.,,,,.,.,,.,....,.,....... .F15D7E6@175;@.0F;3>@D453C8<;>2B
jpayne@0 519 gi|9626243|ref|NC_001416.1| 519 A 28 .,.,,.,.,.,,...,...,..,...,. 4D/=292H;FDECE=EB0751G>B3=CH
jpayne@0 520 gi|9626243|ref|NC_001416.1| 520 A 27 .,,.,..,....,..,...,....,.^K. .37?A/G>90;@@1:86=4=<D>AHH2
jpayne@0 521 gi|9626243|ref|NC_001416.1| 521 A 22 .,,C,,,,.,$..,,...,.,,. /@H05D06989@.3>?399HB6
jpayne@0 522 gi|9626243|ref|NC_001416.1| 522 C 28 .,,,,,,..,,.g.N,..,..,,..... ?45>4F6>1D62516:2F1GA<H3:866
jpayne@0 523 gi|9626243|ref|NC_001416.1| 523 C 33 .,,,.,,,,.,.,,,,...,........,...^K, =/=77<A981<0H6=;0G?:<>1>G9.9280C.
jpayne@0 524 gi|9626243|ref|NC_001416.1| 524 G 25 ....,.,.,.,...,..,N,,.... D>6E;H/0412<G=47.=1279A>=
jpayne@0 525 gi|9626243|ref|NC_001416.1| 525 C 35 .,,..$,,,,.,..,,,...,..,.,,........, :>/<=?7@2699D;4:@H4C/4FD:B.6D0EH040
jpayne@0 526 gi|9626243|ref|NC_001416.1| 526 A 29 .,.,,,,,..,,N,.....,.,...,.., EA59DA?@G=/5AD003F0@E?/E:378/
jpayne@0 527 gi|9626243|ref|NC_001416.1| 527 T 31 ..,,,.,,,,..,.,..,..,...,,..,., B/30G?.27;1C>@2?CA;D=9/:A@B534B
jpayne@0 528 gi|9626243|ref|NC_001416.1| 528 T 31 ,c,.,,...,.,,........,.....,.., 5EH5F27?DG7F5A9<@64/0BG5<85803=
jpayne@0 529 gi|9626243|ref|NC_001416.1| 529 C 33 .,,,,,,.,..,....,...N.,,.A..,..., D14A8F@C8:DHA>84;0661;:8/CC.09477
jpayne@0 530 gi|9626243|ref|NC_001416.1| 530 T 29 ,,.,,,,,.,....,...,...,$...... =:3<E<9B.=.E=8HCH;830B2223EG:
jpayne@0 531 gi|9626243|ref|NC_001416.1| 531 G 34 .,,,.,,,,.,..,,,......,...,.....,, 4C2@:@B/6<<4A5=7E7@7EC>?;=7:/.AFF.
jpayne@0 532 gi|9626243|ref|NC_001416.1| 532 T 29 .,,,,,.,.,,,...N..,..,....,,, 13BGG625577BB/G>=.:7>BH<2HFG.
jpayne@0 533 gi|9626243|ref|NC_001416.1| 533 A 30 .,,.,,,,..,.,....,......,...,^K, ACG074G9B>@;18CF3C>0C325=D;63:
jpayne@0 534 gi|9626243|ref|NC_001416.1| 534 C 26 .t,,,.,..,.....$,..,....... 4B0504?8B.9?927DD;HEFCE<E1
jpayne@0 535 gi|9626243|ref|NC_001416.1| 535 T 30 .,,,,,,,...,,...,.,..,......,, HD>;<C28CE4H.HBC6/?7@7C67>?GD.
jpayne@0 536 gi|9626243|ref|NC_001416.1| 536 T 22 ,,,.,,.,..,,.,,,....,^K. 689<90<D>GB4AG54E.<4/7
jpayne@0 537 gi|9626243|ref|NC_001416.1| 537 T 28 .,.,,,,.,..,.,..,.....,..,,. 60:E@C<:=;G@>/40G<<G0:416CA9
jpayne@0 538 gi|9626243|ref|NC_001416.1| 538 C 30 .,,,,,...,,,....t,.....,...,,^K, <./?HGB>CD?.H:C1B/H:@@2<8@056C
jpayne@0 539 gi|9626243|ref|NC_001416.1| 539 G 30 .,,,,,,..,.,,...,...,...,...., 933A926/F:@=;5?9H<4B>;G6/:.EB8
jpayne@0 540 gi|9626243|ref|NC_001416.1| 540 T 29 .,,.,,,,..,$.,,,.,,....,..,,,. B==HB549=BE47;D;:810D39>;:>F4
jpayne@0 541 gi|9626243|ref|NC_001416.1| 541 G 32 .,,,.,,$,.,...,,.,.,..,...,..,.., @GG4H5B;>:G40>103@CC>A<5C=C/;G85
jpayne@0 542 gi|9626243|ref|NC_001416.1| 542 C 27 ,,.,,,...$,,..,.,.....$.,,.., 8H?/96=?5BA;68<7G=ACEEG:B@7
jpayne@0 543 gi|9626243|ref|NC_001416.1| 543 T 25 ,,.,,,.,..,,.,,.,...,,.., 762?0AH/>906688HG4DE/3?>B
jpayne@0 544 gi|9626243|ref|NC_001416.1| 544 G 30 .,,,,,,,.,..,$...,.,.....,,,.., H>EHH8:D56H.E3H4</6@A67H:<CFD>
jpayne@0 545 gi|9626243|ref|NC_001416.1| 545 T 27 .,,,...,..,.,.....,..,,,.., D=>GDFH27>>869DFCE0494BF1?1
jpayne@0 546 gi|9626243|ref|NC_001416.1| 546 C 22 ,,.,,.,.,..,..,..,.,.. =;@718@:=D1A<E4CD4<8C4
jpayne@0 547 gi|9626243|ref|NC_001416.1| 547 G 26 .,,.,.,....,..,...,..,,.., A.D16;7FH.2=9342@:EB;</D2A
jpayne@0 548 gi|9626243|ref|NC_001416.1| 548 C 23 .,,.,,.,..,.,...,..,,.^K. =HH.<=BDA/4@D;;G2BH/<29
jpayne@0 549 gi|9626243|ref|NC_001416.1| 549 G 30 .,,,,,,.,..,..$.,...$..,..,,..,. :<;C?.0;>DF/@2>AG93?/C610E?9B<
jpayne@0 550 gi|9626243|ref|NC_001416.1| 550 G 26 AaaaAaaAaAaAAaAaAAAAAaaAaA H>;<A.C>68:9</DH9?;3D/649:
jpayne@0 551 gi|9626243|ref|NC_001416.1| 551 A 28 ,.,,,,.,.,.......,...,,..,.. F?CA253:>@6.9CCF;?EE71D71<;=
jpayne@0 552 gi|9626243|ref|NC_001416.1| 552 T 27 .,,,,,,.,.,...,.,.,,,..,..^K. /G/@B<F@DCHF01C=0@18954@:>E
jpayne@0 553 gi|9626243|ref|NC_001416.1| 553 C 28 ,,,,,,,..$,..,.,.,.....,,.... <.2:>>C34D375.1A4@0E@<D.C?3=
jpayne@0 554 gi|9626243|ref|NC_001416.1| 554 G 21 ,,.,,.N,.,,.....,...^K. C2>062/;F/7G.0DH54<1/
jpayne@0 555 gi|9626243|ref|NC_001416.1| 555 C 31 .,,,,,,.,....,......,,,..,....^K. >6H21>F3C>C3632H>:.0A0D2;B;0ABB
jpayne@0 556 gi|9626243|ref|NC_001416.1| 556 A 24 .,,.t.,.,,.,.,..,,.....^K. D6CD:5D=?2E/2BA>>63?=G1E
jpayne@0 557 gi|9626243|ref|NC_001416.1| 557 G 22 ,,t,,$...,.,..,..,..... @87/<G8@14=3E30=;;@327
jpayne@0 558 gi|9626243|ref|NC_001416.1| 558 G 27 .,,.,,.,...,.,...,..,,..... D:EF36:CE8/BHF50B>83@5AF.G.
jpayne@0 559 gi|9626243|ref|NC_001416.1| 559 T 23 ,,.,.,.,.,..,,,..,..... <>6>.B.=DBD0/5F31=AB.F6
jpayne@0 560 gi|9626243|ref|NC_001416.1| 560 G 28 .,,,.,Na.,.,.N..,..,..,..... ;C/?E=BD?ABHE>43>===4?5G=5;9
jpayne@0 561 gi|9626243|ref|NC_001416.1| 561 A 24 .,,.,.,,..,....,,.,...., BGD46<=F@9G9B?CC>>E;876A
jpayne@0 562 gi|9626243|ref|NC_001416.1| 562 A 23 .,..,...,..,.,,,..,.... EC3?H::1?H4G9@6CACF8.E1
jpayne@0 563 gi|9626243|ref|NC_001416.1| 563 A 26 .,,,,,..,..,....,.,......^K. 88/B/B5BEB30327G4//?</05?0
jpayne@0 564 gi|9626243|ref|NC_001416.1| 564 T 30 .,,,.,.,.,...,....,..,,....... B=?H0H?G?<;39;C>F;F.BF<A?8ED<6
jpayne@0 565 gi|9626243|ref|NC_001416.1| 565 T 27 ..,,,,..,,.,....,,,........ A3AGD::6?8>3E.D8<1?D;C<7B/7
jpayne@0 566 gi|9626243|ref|NC_001416.1| 566 G 29 .,n,..,.,.,.,....,..,,.....,. 4H1.B=<7C4H:044D>16E013D841EA
jpayne@0 567 gi|9626243|ref|NC_001416.1| 567 C 32 .,,,.,,,.,,,....,..,,,.........^K. 8A=7D2B7C79.C@D8HH0?.?F1808H1.;0
jpayne@0 568 gi|9626243|ref|NC_001416.1| 568 C 29 .,,,....,...,...,,.,.......,. >;.H?=5H.8774F2>1CHC7;?>D:.B.
jpayne@0 569 gi|9626243|ref|NC_001416.1| 569 A 25 .,$,,,,,..,.,....,..$.,.... 8/68AD;2=/27AC>B@6D@FF1F<
jpayne@0 570 gi|9626243|ref|NC_001416.1| 570 G 29 ,,,..,.,..,....,.,,,......,.. 4>GAA87GH:G4D@@D20H>23HB=CB:3
jpayne@0 571 gi|9626243|ref|NC_001416.1| 571 T 25 .,,,,,.,$...,..,..,.,...,. :4C88A2C.1HC?.H=51764F769
jpayne@0 572 gi|9626243|ref|NC_001416.1| 572 A 28 .,,.,,.,.,.c....,N$c,.,...... BE9.E:9@A=17@7G8:=HG857BGE5?
jpayne@0 573 gi|9626243|ref|NC_001416.1| 573 T 22 ,.,,..,,,...,,..,...,. C5/>GD:86<345FBB@H:<5@
jpayne@0